Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06627 ATGGCAGAACGTGGTGGCGGAGATCGCGGTGGTTTCGGAGCCGGATTCGGCGGAAGAGGCGGTCGTGGCGGTCGTGGCGACAGAGGCCGCGGTGGTCGTAGAAGAGCCGGTGGAAGACGTGAAGAAGAAGAGAAATGGGTTCCAGTGACCAAGCTAGGTCGTCTCGTGAAGGAAGGTAAGATCCGCAGCCTGGAACAGATCTACCTCCACTCTCTCCCAATCAAGGAGCACCAAATCATCGACACTCTCGTCGGTCCAACCCTCAAGGACGAAGTGATGAAAATCATGCCGGTTCAGAAACAAACCCGGGCCGGTCAGAGAACCCGGTTCAAGGCCTTTGTTGTTGTGGGTGACAACAACGGTCACGTTGGGCTAGGTGTTAAGTGCAGCAAGGAAGTTGCTACTGCTATTCGCGGTGCGATTATCTTGGCGAAGCTTTCTGTTATTCCCGTTAGGAGAGGCTATTGGGGGAACAAGATCGGAAAGCCTCACACTGTTCCTTGTAAGGTTACCGGAAAGTGTGGTTCCGTTACTGTTCGTATGGTTCCGGCCCCTCGTGGTTCTGGAATTGTGGCTGCTAGGGTTCCTAAGAAGGTTTTGCAATTTGCTGGTATTGATGATGTTTTCACCTCATCCAGAGGATCCACCAAAACCCTCGGAAATTTCGTCAAGGCCACTTTTGACTGTTTGTTGAAGACCTATGGTTTCCTGACCCCTGAATTCTGGAAGGAAACTAGGTTCTCCAAATCTCCATTCCAAGAGTACACTGATTTGTTGGCCAAGCCAACTGGAAAGACCTTGATCCTTGAAGAAGAAAGGGTAGAAGCTTGA 831 0.5126 MAERGGGDRGGFGAGFGGRGGRGGRGDRGRGGRRRAGGRREEEEKWVPVTKLGRLVKEGKIRSLEQIYLHSLPIKEHQIIDTLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDNNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWKETRFSKSPFQEYTDLLAKPTGKTLILEEERVEA 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06627 276 ProSiteProfiles S5 double stranded RNA-binding domain profile. 88 151 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vivi5g06627 276 NCBIfam 30S ribosomal protein S5 41 248 IPR005711 GO:0003735|GO:0006412|GO:0015935
Vivi5g06627 276 SUPERFAMILY dsRNA-binding domain-like 84 153 - -
Vivi5g06627 276 Gene3D - 151 244 IPR014721 -
Vivi5g06627 276 ProSitePatterns Ribosomal protein S5 signature. 105 137 IPR018192 -
Vivi5g06627 276 FunFam 40S ribosomal protein S2 45 150 - -
Vivi5g06627 276 FunFam 40S ribosomal protein S2 151 244 - -
Vivi5g06627 276 MobiDBLite consensus disorder prediction 1 44 - -
Vivi5g06627 276 MobiDBLite consensus disorder prediction 23 44 - -
Vivi5g06627 276 Gene3D - 45 150 - -
Vivi5g06627 276 PANTHER RIBOSOMAL S SUBUNIT 40 234 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vivi5g06627 276 Pfam Ribosomal protein S5, N-terminal domain 88 152 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vivi5g06627 276 Pfam Ribosomal protein S5, C-terminal domain 172 244 IPR005324 GO:0003735|GO:0005840|GO:0006412
Vivi5g06627 276 SUPERFAMILY Ribosomal protein S5 domain 2-like 164 244 IPR020568 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06627 Vivi-Chr5 173423689 173425604 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06627 42 264 Cytoplasmic Ribosomal Protein Gene Family AT3G57490 91.928 4.56e-153 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06627 K02981 - gmx:100797105 481.485