Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06623 ATGGCCCGAAAAGGAAGGCCCGTTCTATATTCCAGCCCAAACAACATAACGGGCGATAAGCCCATCTTCCATTGCCCCTTACTCCACCAATCTCCATCTTTCTTCAACAATTCGACTCTCTTCAACGTTGAAACCATTTTCATTTTCAGTTTTTCACCACCACATTCCTACACTCACTGCTTCACTTCACTTTCAAATTCAATGCTCACAAGAAAAAAATTCCTCACCATTTTTTCATCTTTCAATCCTTCTAAACTAATTTCTCACCAATTACAATCAAATGCTCTTCCAAATCCAATCCACAACCCTTCCCCCCAAATTTCAACCAATTTTAGGGTTTTACTCTTCCATCTCTATGGAACCCAAGATTCCAAATTTCCCGAATACGAGATGCCTACAGTAACATGGGGAGTGATTCAAGGTCGAAAAGAGAAACTCGTTTCGCGTGTCATCATTTTCGATTACCTCAAGGGTTTGGGAATTATCCCTGACGAATTGCAGGATTTGGAGCTTCCTTCGACAGTTGACGTCATGAGGGAACGCGTCGAGTTTCTTCAGAAACTGGGTTTAACGATTGATGATATAAATCAGTATCCTTTGATGTTGGGTTGCAGTGTGAGAAAAAATGTGATTCCTGTTTTAGGGTATTTGGAAAAAATTGGGATTTCTAGGTCTAAGCTTGGGGAATTTGTTAAGAGTTATCCTCAAGTTTTGCATGCTAGTGTTATTGTTGAGCTTGCTCCTGTTATTAAGTTTCTTAGAGGGCTTGATGTGGAGAAAGATGATATTGGGTTTGTGTTGCAGAAATATCCTGAACTTTTAGGGTTTAAGCTTGAAGGGACTATGAGTACTTCTGTGGCTTATCTTGTTAGTATTGGTGTTAATCCTAGAGATATTGGTCCTATGGTTACACAGTATCCCTATCTTTTAGGGATGAGAGTTGGGACTATGATAAAGCCTCTTGTTGATTATTTGGTTAATTTAGGGTTGCCTAAGAAGATTCTGGCTAGGATGTTGGAGAAAAGAGCTTATATACTTGGGTATGATCTTGAAGAGACTGTGAAATGTAATGTTGATTGTTTGATTAGTTTTGGTGTGAGGAAGGAATGTTTGCCTTCGATTATCGCTCAGTATCCGCAGATTATTGGGCTGCCTCTTAAGGCTAAATTGTCTTCGCAGCAATATTTTTTTAGTTTGAAGGTTAAGATTGATCCGGAAGGGTTTGCGAGGGTGGTGGAGAAGATGCCGCAGGTTGTTAGTCTTCACCAGAATGTGATTATGAAGCCGGTTGAGTTTTTACTCGGTAGGGCTATACCGTTGCAAGATGTGGCTAGTATGGTGGTTAAGTGTCCTCAGTTGGTTGCGCTGCGAGTTGAGCTCATGAAGAATAGTTTTTTCTTCTTCAAAAGTGAGATGGGGAGATCCGTAAAAGAGCTTGTGGAGTTTCCCGAATACTTTACTTATAGTCTGGAGTCAAGGATTAAACCTCGATACCTGAGGCTTAAGAGCAAAGGGATAAATTGTTCGTTGAATTGGATGCTGAATTGTAGTGACCAGAGATTTGAAGAGAGGTTGCAGGGGAATTATATCGAAACCGAGAGTATAGGTCCTTCATTCTTAATTGGTGGAAAATTAGAGTTACCAGGGAATGACATAGTTTCGGATGAGGAAGAAGAGAGTGATGATGAAATGCTATACAGAAGAACTGTTTCTCTTTAG 1719 0.4026 MARKGRPVLYSSPNNITGDKPIFHCPLLHQSPSFFNNSTLFNVETIFIFSFSPPHSYTHCFTSLSNSMLTRKKFLTIFSSFNPSKLISHQLQSNALPNPIHNPSPQISTNFRVLLFHLYGTQDSKFPEYEMPTVTWGVIQGRKEKLVSRVIIFDYLKGLGIIPDELQDLELPSTVDVMRERVEFLQKLGLTIDDINQYPLMLGCSVRKNVIPVLGYLEKIGISRSKLGEFVKSYPQVLHASVIVELAPVIKFLRGLDVEKDDIGFVLQKYPELLGFKLEGTMSTSVAYLVSIGVNPRDIGPMVTQYPYLLGMRVGTMIKPLVDYLVNLGLPKKILARMLEKRAYILGYDLEETVKCNVDCLISFGVRKECLPSIIAQYPQIIGLPLKAKLSSQQYFFSLKVKIDPEGFARVVEKMPQVVSLHQNVIMKPVEFLLGRAIPLQDVASMVVKCPQLVALRVELMKNSFFFFKSEMGRSVKELVEFPEYFTYSLESRIKPRYLRLKSKGINCSLNWMLNCSDQRFEERLQGNYIETESIGPSFLIGGKLELPGNDIVSDEEEESDDEMLYRRTVSL 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06623 572 FunFam Transcription termination factor mterf4, chloroplastic 178 315 - -
Vivi5g06623 572 Pfam mTERF 214 522 IPR003690 GO:0003690|GO:0006355
Vivi5g06623 572 PANTHER CGI-12 PROTEIN-RELATED 213 526 IPR003690 GO:0003690|GO:0006355
Vivi5g06623 572 Gene3D Transcription termination factor 3, mitochondrial 178 317 IPR038538 -
Vivi5g06623 572 Gene3D Transcription termination factor 3, mitochondrial 318 532 IPR038538 -
Vivi5g06623 572 FunFam Transcription termination factor MTERF4, chloroplastic 316 530 - -
Vivi5g06623 572 SMART mt_12 300 331 IPR003690 GO:0003690|GO:0006355
Vivi5g06623 572 SMART mt_12 372 404 IPR003690 GO:0003690|GO:0006355
Vivi5g06623 572 SMART mt_12 264 295 IPR003690 GO:0003690|GO:0006355
Vivi5g06623 572 SMART mt_12 444 475 IPR003690 GO:0003690|GO:0006355
Vivi5g06623 572 SMART mt_12 192 223 IPR003690 GO:0003690|GO:0006355
Vivi5g06623 572 SMART mt_12 336 367 IPR003690 GO:0003690|GO:0006355
Vivi5g06623 572 SMART mt_12 476 507 IPR003690 GO:0003690|GO:0006355
Vivi5g06623 572 SMART mt_12 228 259 IPR003690 GO:0003690|GO:0006355
Vivi5g06623 572 SMART mt_12 409 439 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06623 Vivi-Chr5 173378439 173380249 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vivi5g06623 mTERF 1.5e-105 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06623 K15031 - gmx:100809590 820.846