Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06620 ATGAAGTTAAGGGTTTTTAAAAATTTAATTAAATTGCGAAGAGTAGGGTTTCTCACAGCTTCATTCGGGTCTTCTCCTCTTCACAAATCTACTGCAATGGATACTCAAGTGAAGAATGCTAAGGTTGAGACAATTGTTGGGCGCACTGGTTCAAGAGGACAGGTCACTCAAGTTAGAGTCAGTTTTCTGGATGACCCGAGCCGTCGCATTATGAGGAATGTCAAAGGACCTGTCAGAGTGGGTGATATCCTCACTCTACTCGAGTCTGAAAGAGAAGCAAGGAGGTTGCGCTAG 294 0.4388 MKLRVFKNLIKLRRVGFLTASFGSSPLHKSTAMDTQVKNAKVETIVGRTGSRGQVTQVRVSFLDDPSRRIMRNVKGPVRVGDILTLLESEREARRLR 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06620 97 Pfam Ribosomal protein S28e 36 96 IPR000289 GO:0003735|GO:0005840|GO:0006412
Vivi5g06620 97 FunFam 40S ribosomal protein S28 30 97 - -
Vivi5g06620 97 Gene3D - 29 97 IPR012340 -
Vivi5g06620 97 ProSitePatterns Ribosomal protein S28e signature. 88 96 IPR028626 -
Vivi5g06620 97 Hamap 30S ribosomal protein S28e [rps28e]. 33 97 IPR000289 GO:0003735|GO:0005840|GO:0006412
Vivi5g06620 97 CDD S1_S28E 40 97 IPR000289 GO:0003735|GO:0005840|GO:0006412
Vivi5g06620 97 PANTHER 40S RIBOSOMAL PROTEIN S28 33 97 IPR000289 GO:0003735|GO:0005840|GO:0006412
Vivi5g06620 97 SUPERFAMILY Nucleic acid-binding proteins 33 97 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06620 Vivi-Chr5 173338583 173339448 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06620 33 97 Cytoplasmic Ribosomal Protein Gene Family AT5G03850 76.923 4.81e-28 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06620 K02979 - pop:7488050 81.2629