Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06616 ATGTCACCTTTTAATGAGAAATATGGTCTTCCTCAACATTTTCCAGCCAATCTTAGGGTTCTTGTAATAGACCATGACATCAGTTTTCTTAATGCTATTGAAAAAACGTGTTTTCAATTCCATTATCAAGTTAAGACATGCTCTAAGGTTTCTGATGCCTTGGATCTATTGAGGAAAACAACTGATTGTTTTGATATGGTACTAATCGAAGCTCAAATGCCCGACATGGATTCCTACGAGTTTTTGCAACATGTCACACAAGAAATCAAAATCCCAGTTATCATGATGTGTGCTGATGGATCAACAAATGCAGTGATGAAGAGCGTTGTAAACGGAGCTTGTGATTATTGGATCAAACCATTGAATGAGAATCAAATCAAGAACATGTGGCAGCATGTTGCAAGAAGTGTTATGAAAGAAAATAAAAAACAAGAAATTAATAGGGAGAAATTGAATGTAGAAGGTAGCAAAACAGCAGTAGAAGATTATATAATGATACAAGATACTGAAACCGATAAAAATAAGCAAGAAATACAAGCAGAGAAGTCACGTCTAGCACGTCTAGCATGGTCACCTGATTTACACAAAAAGTTTGTTGATGCAGTGATAGAACTCGGCGCTGATAGAGCTGTACCAAAGAAAATTCAAGAAATAATGAATGTTGATGGATTGACTAGAGGCCACATTGCTAGTCATTTGCAGAAATATAGACAATATTTAAAGAGAGAAAATCTAGAGAAACACATAAGAATTGCTCAAAATATTATGGAAACCAACAATCCATATGGATATTCTTCAGGATTTAATTATCAACCTTATGGTGGTGCTTCTTCTTCTGGAGTTTCTCAAAACCAAAACCAAAATGCACCATTATGGAATAACAATAATTCTCATATAGAACAAGTTCCCAACAATATGTTATGGCAGCAACCTCAAGAATTTTCACCATCAACATATGGAACATGGCAACAAGTTCCGATGCCTCCGTTGACAACTGGTGCTTTAGGAGCTTCTCCTAGTTTGGCACCTTTTGCTGCTGGTGTTAACAATGGAGGAGTCTCCTCCAATGCTGCTATTTTTGAAGATAATGGTAACTCAAGAAGGGTGGATCAGAATGAGGCGGAGCTGAATTCTATCTATGATTCACTGGAAAATCATCTATTATCTTGA 1170 0.3641 MSPFNEKYGLPQHFPANLRVLVIDHDISFLNAIEKTCFQFHYQVKTCSKVSDALDLLRKTTDCFDMVLIEAQMPDMDSYEFLQHVTQEIKIPVIMMCADGSTNAVMKSVVNGACDYWIKPLNENQIKNMWQHVARSVMKENKKQEINREKLNVEGSKTAVEDYIMIQDTETDKNKQEIQAEKSRLARLAWSPDLHKKFVDAVIELGADRAVPKKIQEIMNVDGLTRGHIASHLQKYRQYLKRENLEKHIRIAQNIMETNNPYGYSSGFNYQPYGGASSSGVSQNQNQNAPLWNNNNSHIEQVPNNMLWQQPQEFSPSTYGTWQQVPMPPLTTGALGASPSLAPFAAGVNNGGVSSNAAIFEDNGNSRRVDQNEAELNSIYDSLENHLLS 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06616 389 Pfam Myb-like DNA-binding domain 188 237 IPR001005 -
Vivi5g06616 389 CDD REC_typeB_ARR-like 20 134 - -
Vivi5g06616 389 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
Vivi5g06616 389 PANTHER TWO-COMPONENT RESPONSE REGULATOR 18 285 IPR045279 GO:0009736
Vivi5g06616 389 SUPERFAMILY CheY-like 17 149 IPR011006 -
Vivi5g06616 389 Gene3D - 182 243 - -
Vivi5g06616 389 SUPERFAMILY Homeodomain-like 186 242 IPR009057 -
Vivi5g06616 389 FunFam Two-component response regulator 180 244 - -
Vivi5g06616 389 NCBIfam myb-like DNA-binding domain, SHAQKYF class 187 238 IPR006447 GO:0003677
Vivi5g06616 389 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 182 241 IPR017930 -
Vivi5g06616 389 Coils Coil 134 154 - -
Vivi5g06616 389 Pfam Response regulator receiver domain 20 129 IPR001789 GO:0000160
Vivi5g06616 389 SMART REC_2 18 130 IPR001789 GO:0000160
Vivi5g06616 389 Gene3D - 17 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06616 Vivi-Chr5 173245703 173247642 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06616 14 242 Response Regulator Gene Family AT2G25180 39.506 1.55e-51 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Vivi5g06616 Response_reg 2.7e-14 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06616 - K14491 vvo:131606053 775.393