Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06609 ATGGTTTCAAGATCTTATTCAAATCTACTAGAGCTAGCTTCTGGTGAGTCTCCAACTTTTGAACATATGAATAGGAGGATTCCTAGGATTATGACTGTTGCTGGTTTGATATCTGATGTTGATAATGATGATGAGCCTTTGGAGAGTGTGTGTTCTGACCCTTCATCTTCATCTGTTCAAAGAGAAAGGATCATAATTGTGGCTAATCAGTTACCTATAAAAGCTCAGAGGAAGCAAGATAGTGGTAATAGCAGGAGTAATTGGTTTTTCAGCTGGGATGAGAATTCACTTCTGCTTCAACTCAAAGATGGGTTAGGAGATGATGATGTTGAGGTTATTTATGTTGGTTGTCTTAAGGAAGATGTTCATCTGAATGAACAAGATGAGGTTTCACAGATTCTACTTGAGAGCTTTAAATGTGTTCCTGTTTTTCTCCCTGGTGATATGTTTACAAGATACTATCATGGCTTTTGCAAGCAACAGTTATGGCCACTGTTTCATTACATGTTGCCTTTGTCACCAGACCTTGGTGGTAGGTTCAATAGGTCACTGTGGCAGGCTTATGTATCAGTCAACAAGATATTTGCTGATAGGATTATGGAAGTGATTAACCCTGAAGATGATTATGTTTGGATTCATGATTATCATCTCATGGTTTTGCCAACTTTCTTGAGAAGAAGGTTTAACAGAGTGAAACTTGGATTTTTTCTGCATAGTCCTTTTCCTTCATCAGAAATTTACAAGACATTGCCTATTAGGGAAGAACTTTTGAGAGCCCTTTTGAATTCTGATTTGATTGGTTTCCACACTTTTGATTATGCAAGACATTTTCTCTCATGTTGTAGTAGGTTGCTTGGTCTTACCTATGAATCTAAAAGGGGTAATATTGGGATTGAATATTATGGTAGGACAGTTAGTATCAAGATTCTTCCTGTTGGCATACACATGGGTCAGCTTCAATCAGTTCTAAGCTTATCAAAGACTGAAGAGAAAGTTTCTGAGCTCATAAGACAGTTTTCTGATAAAGGAAAGATAATGTTACTTGGTGTGGATGACATGGATATCTTCAAAGGGATAAGTTTGAAGCTATTAGCCATGGAGCAGCTTCTTATTCAGCATTCTGAGTGGCATGGAAAGGTTGTATTGGTTCAGATTGCCAATCCTGCAAGAGGGAAAGGGAGGGATGTGAAGGAAGTTCAAGAAGACACTAAGGCGACTGCGAAGCGGATTAATGAAGCATTTGGTAAACCTGGTTATGATCCTGTCATTCTGATTGAGGAGCCGTTAAGGTTTTATGAAAAAGTTGCGTATTATGTTGTGGCCGAGTGTTGTTTAGTGACTGCGGTTAGGGACGGAATGAATCTCATTCCGTATGAATATATAATCAGTCGTCAAGGGAATGAGAAATTGGATAAAGTTCTGGGAATAGGTTCTTCTTTAAAGAAAAGTATGTTGGTTGTGTCTGAGTTTATTGGTTGTTCGCCGTCTTTAAGCGGAGCTATCAGAGTGAATCCATGGAATATTGATGCAGTAGCAGATGCAATGGACTTGGCTTTGGAAATGGCTGATTCAGAGAAACAGCTTAGGCACGAGAAGCATTATAGATATGTTAGTACTCATGATGTCGGTTATTGGGGTCGCAGCTTCTTGCAAGATTTGGAAAGGACTTGCAGTGATCACGTAAGGAGAAGGTGGTGGGGGATTGGTTTTGGATTGAGTTTTCGAGTTGTAGCACTTGATCCGAACTTCAAGAAGCTATCAATGGAGCACATAGTTTCAGCTTACAAGCGGACAAAAACTAGGGCGATACTTCTCGATTATGATGGTACACTAATGCCTCAGGCTTCCATTGATAAGAGCCCAAACAGTAATTCCATTAAAATGCTTAATAGTTTGTGTAAAGATGAGAACAACATGGTGTTTCTCGTCAGTGCTAAAAGCCGAACGAAGCTTGCTGAGTGGTTTTCTCCTTGTGAAAATCTGGGAATTGCTGCTGAACATGGTTACTTTTTAAGACTTAAAGGGGATGCAGAATGGGAAACCTGCGGACCTGTAACAGACTCCAGTTGGAAACAAATTGCTGAGCCTGTGATGAAGCTTTATACCGAAACAACAGATGGATCTACGATTGAAGATAAAGAGACCGCACTTGTTTGGTGCTACGAGGATGCGGATCCAGATTTTGGATCATGCCAGGCTAAGGAACTTCTTAATCACCTTGAAAGTGTGCTTGCAAATGAACCGGTAAAAGTGAAGAGTAGCCTGAATAATATAGAGGTCAAACCACAGGGTGTGAACAAGGGGCTTGTGGCTAAACGCCTACTTTCAACCATGCAAGGAAAGGGAATGTCACCTGATTTTGTTTTATGTATTGGAGACGACCGATCTGATGAAGACATGTTTGAGGTAATCACTAGCTCCGGTCCTTCCATGGCACCCAGGGCTGAAGTATTTGCATGCACCGTCGGTAGAAAACCCAGTAAGGCAAAGTACTATCTGGATGATACTACTGATATAGTGAGAATGGTGCAGGGTTTAGCCTCTGTTTCAGACCAAACAGTTTTATTTTAG 2571 0.4045 MVSRSYSNLLELASGESPTFEHMNRRIPRIMTVAGLISDVDNDDEPLESVCSDPSSSSVQRERIIIVANQLPIKAQRKQDSGNSRSNWFFSWDENSLLLQLKDGLGDDDVEVIYVGCLKEDVHLNEQDEVSQILLESFKCVPVFLPGDMFTRYYHGFCKQQLWPLFHYMLPLSPDLGGRFNRSLWQAYVSVNKIFADRIMEVINPEDDYVWIHDYHLMVLPTFLRRRFNRVKLGFFLHSPFPSSEIYKTLPIREELLRALLNSDLIGFHTFDYARHFLSCCSRLLGLTYESKRGNIGIEYYGRTVSIKILPVGIHMGQLQSVLSLSKTEEKVSELIRQFSDKGKIMLLGVDDMDIFKGISLKLLAMEQLLIQHSEWHGKVVLVQIANPARGKGRDVKEVQEDTKATAKRINEAFGKPGYDPVILIEEPLRFYEKVAYYVVAECCLVTAVRDGMNLIPYEYIISRQGNEKLDKVLGIGSSLKKSMLVVSEFIGCSPSLSGAIRVNPWNIDAVADAMDLALEMADSEKQLRHEKHYRYVSTHDVGYWGRSFLQDLERTCSDHVRRRWWGIGFGLSFRVVALDPNFKKLSMEHIVSAYKRTKTRAILLDYDGTLMPQASIDKSPNSNSIKMLNSLCKDENNMVFLVSAKSRTKLAEWFSPCENLGIAAEHGYFLRLKGDAEWETCGPVTDSSWKQIAEPVMKLYTETTDGSTIEDKETALVWCYEDADPDFGSCQAKELLNHLESVLANEPVKVKSSLNNIEVKPQGVNKGLVAKRLLSTMQGKGMSPDFVLCIGDDRSDEDMFEVITSSGPSMAPRAEVFACTVGRKPSKAKYYLDDTTDIVRMVQGLASVSDQTVLF 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06609 856 NCBIfam HAD-IIB family hydrolase 603 804 IPR006379 -
Vivi5g06609 856 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 63 557 - -
Vivi5g06609 856 NCBIfam trehalose-phosphatase 599 846 IPR003337 GO:0003824|GO:0005992
Vivi5g06609 856 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 56 320 - -
Vivi5g06609 856 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 29 847 IPR001830 GO:0003824|GO:0005992
Vivi5g06609 856 SUPERFAMILY HAD-like 601 846 IPR036412 -
Vivi5g06609 856 CDD GT20_TPS 63 554 IPR001830 GO:0003824|GO:0005992
Vivi5g06609 856 Pfam Trehalose-phosphatase 604 836 IPR003337 GO:0003824|GO:0005992
Vivi5g06609 856 Gene3D - 600 731 IPR023214 -
Vivi5g06609 856 Gene3D - 732 854 IPR023214 -
Vivi5g06609 856 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 600 717 - -
Vivi5g06609 856 Gene3D Glycogen Phosphorylase B; 322 538 - -
Vivi5g06609 856 FunFam Alpha,alpha-trehalose-phosphate synthase 322 538 - -
Vivi5g06609 856 Gene3D Glycogen Phosphorylase B; 55 321 - -
Vivi5g06609 856 CDD HAD_TPP 602 841 - -
Vivi5g06609 856 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 730 855 - -
Vivi5g06609 856 Pfam Glycosyltransferase family 20 63 554 IPR001830 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06609 Vivi-Chr5 173156803 173160844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06609 1 852 Trehalose Biosynthesis Gene Families AT1G68020 79.215 0.0 1433
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06609 K16055 - cit:102609352 1479.54