Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06593 ATGTCTCCTCCAACTCCAACTCCAACTCTGCACGATGTCTTCCTCAGCTTCCGAGGTGAAGACACTCGCAACGGTTTCACCGGTCATCTTTACGCCGCTCTATGCCGTGAAAACATCAATACTTTCATTGATGACAGACTCAACAGAGGTGACCACATTTCGGATTCTCTTCGCAAAGCAATTGAGGAATCAGCTATCTATGTTATCGTTTTTTCCGAACACTATGCCTACTCCACTTGGTGCTTGGATGAACTAACACAGATCCTGGAGTGCAAAGAAAAGTTTGGAAGGTTGGTGATACCAATTTTCTACAAGGTGGATCCGTCTAATGTCAGGCATCAAAGAGGAAGTTATGCTGATGCGTTTGTTAAGCACGAGAAGCGATTTAAGGAAGAGTTGATACTGAAATGGAAGGCTGCTCTAACCCAAGTTGCTGGATTCTCTGGTTGGGATTCAAAGAACAGACATTTTGAATACCTTCTCGTTGAAGAAATTGCTAAAGATATCAGGAGAAAGTTGTACCGTTCTCCTTTTACGCTGAGTGATTGTCAAGGACAGATTGGAATTCACAAGCATGTTGCACAAATCAAATCTATTTTGCATGTTGAGGCTACAGATGTTCGGATCATAGGAATTTGGGGCATTGGAGGAATAGGCAAGACAACAATTGCTAGTGCAGTATATAAAAACTTGGCTCCTCAGTTCAGTTCCAGCAGCTTTGTTGAAAAAGTTCACGAAGAAATAGAAAGATTTGGAATACGTCACGTAAAAAGCAATTATTTATCTGAGTTACGGGCAAAGGCTCTCCTTATTCTCGATGACGTGAACAATTCGGGTCAACTTAAAGATTTAATTGGAGGGCGTGATGCCTTTGACCAGGGAAGTAGAATCATTGTGACTAGTAGAGACATGCAAGTGCTTAAGAATGTAGATGCTGATGAAATATATGAAGTGGATGAGATGAGTTTTCAAGAATCTCTACAACTCTTCAGTTTCCATGCCTTCAAACAAAACTATCCTATAGGAGCTTATATGGGATTATCAGAGAAGGTATTAAATTATGCCAAAGGGATCCCATTAGCTCTCAAAGTTTTGGGCTTATCACTTCAAAATAGAACGGAGGAAGAATGGGAGAGTGCTTTGGGGAAGTTGAAAAAGCAACCTGAAGGTGAAATTTTTGGTGCCTTGAAATTAAGTTATGATAGACTTGATGATGAGGAGAAGGATATATTTCTTGAAATAGCTTGCTTCTATAGAGGACATGATATGAATACTGTCAAACAAATACTAGATAGCTGTGGTTTCTCGGCTACTATTGGAATGAGAGTTCTCATTGATCGGGGCCTTATATCTATTCTAAAAGGTGAAATTGTGCTGCACGATTTGATACACGAAATGGGACTTGAAATTGTTCGTCAACAATGTGTAAATGATCCTGGAAAACGCAGCCGACTGTGGAAACACGAGGATGTTTATCATGTTTTAAGAAAGAACAAGGGGACAGATTCTGTGCAATGTATATTTCTTGACATGTGCCGAATCAAAGAAGTTCAACTGAATCCTCAAACTTTCAAAATGATGCACAATCTAAGACTGCTGCAGTTCTATAAATCTAGCAAAAATCAAGGCTCAAATGTGTACATTCCATCATTTCTTCTTAGTCTTCCAGATGATTTAAGATTTCTTCGCTGGGATGCCTTCCCTCAAAGATCTTTGCCGCTGGATTTTTCTCCAGAAAATCTTGTTCAACTTGATATGCGTGACAGTCAACTTGAACAACTTTGGGAGGGAGATCAGCATTTACCGAATTTGAAAAAGCTTGATCTTAGTGGTTCTCGAAAACTGATTCGAATACCAGACCTATCAGGATGCCCAAACATTGAAGAAGTAATTCTTAGTGAATGCAAAGAGTTGGTTCAAGTTTACTCTTCTGGTTTTCTCAGCAGGCTAAAATGTTTATGGTTAAATGGTTGTGTTGAGCTTAGGAGTTTAATCATTCCTAGCAATATTCTCTCGAGGTCTTTAGGATTAATAGTTCTATATAATTGTTGCAACCTTAAGATGTTTTCGGTCAGTAGTACAAACACGGGGTTCTATCATATGGTTGCTCACGTGCTAGAACACGAAGGGATAGCATACACAGAAACATTTTGCCCGGGAAATTGGCACTCGGCATCAACCAACAACCTAGTTCCATATTTGAGAAATTCTCATATACTATTGACCCTCTTGTCTCTGATGAGTTAA 2247 0.3956 MSPPTPTPTLHDVFLSFRGEDTRNGFTGHLYAALCRENINTFIDDRLNRGDHISDSLRKAIEESAIYVIVFSEHYAYSTWCLDELTQILECKEKFGRLVIPIFYKVDPSNVRHQRGSYADAFVKHEKRFKEELILKWKAALTQVAGFSGWDSKNRHFEYLLVEEIAKDIRRKLYRSPFTLSDCQGQIGIHKHVAQIKSILHVEATDVRIIGIWGIGGIGKTTIASAVYKNLAPQFSSSSFVEKVHEEIERFGIRHVKSNYLSELRAKALLILDDVNNSGQLKDLIGGRDAFDQGSRIIVTSRDMQVLKNVDADEIYEVDEMSFQESLQLFSFHAFKQNYPIGAYMGLSEKVLNYAKGIPLALKVLGLSLQNRTEEEWESALGKLKKQPEGEIFGALKLSYDRLDDEEKDIFLEIACFYRGHDMNTVKQILDSCGFSATIGMRVLIDRGLISILKGEIVLHDLIHEMGLEIVRQQCVNDPGKRSRLWKHEDVYHVLRKNKGTDSVQCIFLDMCRIKEVQLNPQTFKMMHNLRLLQFYKSSKNQGSNVYIPSFLLSLPDDLRFLRWDAFPQRSLPLDFSPENLVQLDMRDSQLEQLWEGDQHLPNLKKLDLSGSRKLIRIPDLSGCPNIEEVILSECKELVQVYSSGFLSRLKCLWLNGCVELRSLIIPSNILSRSLGLIVLYNCCNLKMFSVSSTNTGFYHMVAHVLEHEGIAYTETFCPGNWHSASTNNLVPYLRNSHILLTLLSLMS 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06593 748 Pfam NB-ARC domain 265 390 IPR002182 GO:0043531
Vivi5g06593 748 SUPERFAMILY L domain-like 504 691 - -
Vivi5g06593 748 Gene3D Ribonuclease Inhibitor 490 700 IPR032675 -
Vivi5g06593 748 Gene3D - 320 404 IPR042197 -
Vivi5g06593 748 PRINTS Disease resistance protein signature 209 224 - -
Vivi5g06593 748 PRINTS Disease resistance protein signature 355 369 - -
Vivi5g06593 748 PRINTS Disease resistance protein signature 599 615 - -
Vivi5g06593 748 FunFam Disease resistance protein (TIR-NBS-LRR class) 7 175 - -
Vivi5g06593 748 SMART till_3 10 147 IPR000157 GO:0007165
Vivi5g06593 748 Gene3D - 179 317 IPR027417 -
Vivi5g06593 748 ProSiteProfiles TIR domain profile. 9 173 IPR000157 GO:0007165
Vivi5g06593 748 Pfam TIR domain 11 183 IPR000157 GO:0007165
Vivi5g06593 748 Pfam Leucine Rich Repeat 580 599 IPR011713 -
Vivi5g06593 748 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 150 IPR035897 -
Vivi5g06593 748 SUPERFAMILY "Winged helix" DNA-binding domain 391 495 IPR036390 -
Vivi5g06593 748 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 11 687 IPR044974 GO:0006952
Vivi5g06593 748 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 169 412 IPR027417 -
Vivi5g06593 748 Gene3D - 9 178 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06593 Vivi-Chr5 173050555 173054414 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06593 11 708 WRKY Transcription Factor Family AT4G12020 32.787 2.79e-101 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06593 - - vvo:131604015 1490.32