LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi5g06590	ATGGTGAAAGCTGCGAGCGAGAACGGTTCTTCTTCAGTGGCACCTTTCTTGACCAAATGTTACGATATGGTTCAAGATCCTTCCACCGACTCCATCATCTATTGGTCTCAATCCAATAACAGTTTCATCATCGATAACGTCTCCAAATTCTCTCTCACTCTTCTTCCTAATTACTTCAAACACAACAATTTCTCCAGCTTCGTTAGACAACTCAATATCTATGGTTTCAGGAAAATTGATACGGATAACTGGGAATTTGCCAATGAAAACTTCATTAGGGGTCAAAAGCATTTGTTGAAGAATATACGTAGGAGGAAACATCCACATGTTGCAGATCAGCAAAAAGCATTGCCGCAGAAAACCAATTCTGATGAACCATCACTAGAAGCAATTAATTCAAACCTGTGGAAAGAAGTTGAGAATCTCAAATCCGATAGAAAAACCCTGACACAGGAGTTGGTTAAACATAAGCAGCACCTTGAATCTTCTGAGAGTAAGTTGCTTCTACTGAGTGATCGTCTTGAAGGAATGGAGAAGCATCAACAACAAATGCTATCATTCTTGGTCATGGTTGTACAATGCCCTGGATTCCTGGCTCAGCTGCTTCACCCTAAGGAAAATAACTGGCGTTTTGCAGAAGAAGGGAATATGTGGGACCAGAGTAGCCAAGATGATGAACCAGTTCCGTCTGATGGAGCGATTATAAAGTATAAGCCACCTGTAAGTGAAACACTAAGGCCTGTAGTTCCGCGATCTCCTGCCTTTGAACCAGAACCTGAACTTTCTGCAGATGGGTTAAAAGACTTGTGCATCAGTTCTGAGTTCTTGAAATTGCTCCTAGATGAGAAATTATCTCCATTAGATAACCATTCTCCGTTTCTCGTACCGGATTTACCCGATGATGGTTCGTGGGAAAAACTTTTTTTGGGCAGTCCTTTCCCCGAAAACACTGAAGATACTGATCATGAAAATGAGAGGCACAATGTTAGTGAAATGGAGATGGAACCTATCACGGAAACTCCAAATGAAAGATCTGCTTTTGAAGCAATGATAGTAGAAATGGAGAAAACTCAAGCATGA	1080	0.4111	MVKAASENGSSSVAPFLTKCYDMVQDPSTDSIIYWSQSNNSFIIDNVSKFSLTLLPNYFKHNNFSSFVRQLNIYGFRKIDTDNWEFANENFIRGQKHLLKNIRRRKHPHVADQQKALPQKTNSDEPSLEAINSNLWKEVENLKSDRKTLTQELVKHKQHLESSESKLLLLSDRLEGMEKHQQQMLSFLVMVVQCPGFLAQLLHPKENNWRFAEEGNMWDQSSQDDEPVPSDGAIIKYKPPVSETLRPVVPRSPAFEPEPELSADGLKDLCISSEFLKLLLDEKLSPLDNHSPFLVPDLPDDGSWEKLFLGSPFPENTEDTDHENERHNVSEMEMEPITETPNERSAFEAMIVEMEKTQA	359

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi5g06590	359	PRINTS	Heat shock factor (HSF) domain signature	16	39	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vivi5g06590	359	PRINTS	Heat shock factor (HSF) domain signature	54	66	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vivi5g06590	359	PRINTS	Heat shock factor (HSF) domain signature	67	79	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vivi5g06590	359	MobiDBLite	consensus disorder prediction	316	333	-	-
	Vivi5g06590	359	Pfam	HSF-type DNA-binding	16	105	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vivi5g06590	359	SUPERFAMILY	"Winged helix" DNA-binding domain	11	105	IPR036390	-
	Vivi5g06590	359	FunFam	Heat shock transcription factor 1	9	106	-	-
	Vivi5g06590	359	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	7	226	IPR027725	-
	Vivi5g06590	359	MobiDBLite	consensus disorder prediction	311	343	-	-
	Vivi5g06590	359	SMART	hsfneu3	12	105	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vivi5g06590	359	Coils	Coil	139	166	-	-
	Vivi5g06590	359	Gene3D	-	8	106	IPR036388	-
	Vivi5g06590	359	ProSitePatterns	HSF-type DNA-binding domain signature.	55	79	IPR000232	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi5g06590	Vivi-Chr5	173011070	173013705	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi5g06590	13	318	HSF	AT1G67970	47.573	1.11e-89	272

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Vivi5g06590		HSF_DNA-bind	6.4e-31	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi5g06590	K09419		-	gmx:100813694	522.702