Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06584 ATGGAACAGGTTCAATGTTTCGGCAGGAAGAAGAACGCGGTCGCGGTGACTCACTGCAAGAGAGGTCGCGGTCTCATCAAGATCAATGGCTCTCCGATCGAACTCGTCCAGCCTGAGATTCTCCGTTTCAAGGCGTTCGAGCCAATTCTCCTTCTCGGAAGACACCGTTTTGCTGGCGTTGATATGAGGATCAGAGTGAAGGGAGGAGGTCACACTTCTCAGATCTATGCTATCAGACAGAGTATCGCGAAGGCTTTGGTGGCTTACTATCAGAAATATGTTGATGAACAGAGTAAGAAGGAGATCAAGGATATTCTTGTGAGGTATGATAGGACTTTGCTTGTGGCTGATCCTAGACGTTGTGAGCCGAAGAAGTTTGGTGGACGTGGTGCCCGTGCTAGGTTCCAGAAATCTTACCGTTAG 423 0.4894 MEQVQCFGRKKNAVAVTHCKRGRGLIKINGSPIELVQPEILRFKAFEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06584 140 Gene3D - 1 140 IPR014721 -
Vivi5g06584 140 FunFam 40S ribosomal protein S16 1 140 - -
Vivi5g06584 140 ProSitePatterns Ribosomal protein S9 signature. 68 86 IPR020574 GO:0003735|GO:0005840|GO:0006412
Vivi5g06584 140 PANTHER RIBOSOMAL PROTEIN S9 2 137 IPR000754 GO:0003735|GO:0005840|GO:0006412
Vivi5g06584 140 Pfam Ribosomal protein S9/S16 8 140 IPR000754 GO:0003735|GO:0005840|GO:0006412
Vivi5g06584 140 SUPERFAMILY Ribosomal protein S5 domain 2-like 3 140 IPR020568 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06584 Vivi-Chr5 172786112 172786766 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06584 2 140 Cytoplasmic Ribosomal Protein Gene Family AT2G09990 90.647 1.61e-92 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06584 K02960 - gmx:100527911 273.092