Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06575 ATGCCCTCACAGATTCCTAATTCTCTTAGAGATTGTGTTGCGCTCCAAACTTTCAGTGCACAGAGTGCTGGAATTGTTGGGACCATCCCAAATTTTTTTGGCAGAGATGGTCCCTTCCCCGGGTTGATTTTCTTGGCATTGTCTAATAATTACTTAGAAGGTGTTTTGCCTGCAAGTCTTTCTAAAAGTTCAATAGAGAACCTTTTGGTGAATGGCCAAAATAGTAATAACAAACTCAATGGTACCCTTGCTGTGATACAAAATATGGCTTCTTTGAAACAAATATGGGCTAACGGTAACTCATTTACCGGTCCTATACCTGATTTATCTCACCTTGATCAATTATCTGATGTAAATTTAAGAGATAACCAATTGACGGGTGTTGTTCCGCCTTCTCTTGTGAACCTTCCAAGATTGCAAGTGGTGAATTTGACAAACAATTACCTTCAAGGTTCACCTCCCAAGTTTAGAGACGGTATTGGAGTTGATAATAATATGGATGGGAGTAGAAATCAATTTTGCACCAATGTTTCAGGGCAACCTTGTAGTTCTCTTGTGAATGTTTTGTTATCAGTTATTGAACCTTTGGGTTATCCTCTCAAGTTTGCTGAAAGTTGGCAGGGTAATGATCCATGTGCTAATAAATGGTTAGGTATAGTTTGTTCTGGTGGGAATATTTCAATTATAAATTTCCAGAGCATGGGAATAACTGGCACTATTTCTCCTACTTTTGCTAGTATTTCATCTTTAACAAAATTGCTTCTTGCAAACAATAGTCTCATTGGTACAATACCGAACCAACTTACTAGTATGCCTCTTCTACAAGAATTGGATGTTTCTAATAATCATTTATATGGTCGTGTTCCGTCGTTTCATAATGGTGTGGTTCTTAAATTTGGTGGAAATCCGGATATTGGGAAGGATAAACCCAGTAATGCAAGTAGTTATGGGTTTGAAGGTAGTGGTAGTAACAATAATGTTGTCGGCATCACAATTGTAATTTTGGTGGGAGCTGTCATTTTAATTGGTGTTGGGGTATTATTATATATTAAGTTTTGGAAAAGGTCTGGCAATAATTCAAGGAAAAGTTTAAGTCATGATTCAATAATGGTAGATCATAAATATCAATTGGATGATAATATTCTGAATGTAAGTGTTATTGGTGGTGGTGAGGGAGGAGGTGCATTAAGCCCCACTGGTAACATGGTGATTTCAATTCAAGTTTTGAGACAAGTTACACATAATTTTCGTGAGGAAAACATTATTGGAAAGGGTGGTTTTGGCACTGTTTACAAAGGGGAATTGCACGATGGGACACAAATTGCAGTGAAAAGGATGCAATCGGGAATAACAGACGAGAAAGGACCAAATGAATTCACATCAGAGATTATGGTTCTTACAAAAGTCCGACATAAACATTTGGTTGCACTCTTAGGGTATTGCTTAGATAGAAATGAAAGACTCTTGGTCTATGAGTACATGCCTCAAGGTGCTCTAAGTAAACACTTATTCAATTGGAAAGAGGAAGGGATAAAACCACTAGAATGGAAAACGAGGCTTAGTATTGCCTTGGATGTTGCTAGAGGTGTGGAATATCTTCATGGGTTGACCCAACAAATTTTTATCCACAGGGATCTCAAACCATCCAACATTTTACTTGGAGATGATTTACGGGCTAAAGTATCTGACTTTGGATTGGTTCGACTTGCTCCCGAAGGAAAAGCTTCATTTCAAACTAGACTTGCAGGAACTTTTGGATATATGGCACCAGAGTATGCTGCCACCGGAAGACTAACAACAAAGGCCGATGTATATAGTTTTGGTGTAATTCTTATGGAGATCGTAACAGGAAGGAAAGCGCTTGATGAGAGCCAACCAGAAGAGAACATCCACCTTGTAACATGGTTTCGTCGGATGTTATTGAATAAGGATTCATTTCGAACGATCATTGACAAAACAATTGAAGTTGATGAAGAAACATATGAAAGCATCAACACGGTTGCAGAGTTGGCAGGGCATTGTAGTGCAAGGGAGCCTTATCAGCGTCCTGATATGAGTCATGCAGTGAATGTGTTATCATCTCTTGTTGAAGTATGGAAACCTATAGAACAAGATGTTGATGATGTATATGGGATCAACTTTGATATGACATTACCAGAAGCTCTCCAAAGGTGGCAAGCTTTTGAAGGAAAAAGCACATTCAATTTAACACGTTCTCCTTCATCGCTGCATACTAGTGGTGGCAACACACACTCCCGTACATCTCCAAATGTGTCTTCATCACATACATAA 2292 0.3857 MPSQIPNSLRDCVALQTFSAQSAGIVGTIPNFFGRDGPFPGLIFLALSNNYLEGVLPASLSKSSIENLLVNGQNSNNKLNGTLAVIQNMASLKQIWANGNSFTGPIPDLSHLDQLSDVNLRDNQLTGVVPPSLVNLPRLQVVNLTNNYLQGSPPKFRDGIGVDNNMDGSRNQFCTNVSGQPCSSLVNVLLSVIEPLGYPLKFAESWQGNDPCANKWLGIVCSGGNISIINFQSMGITGTISPTFASISSLTKLLLANNSLIGTIPNQLTSMPLLQELDVSNNHLYGRVPSFHNGVVLKFGGNPDIGKDKPSNASSYGFEGSGSNNNVVGITIVILVGAVILIGVGVLLYIKFWKRSGNNSRKSLSHDSIMVDHKYQLDDNILNVSVIGGGEGGGALSPTGNMVISIQVLRQVTHNFREENIIGKGGFGTVYKGELHDGTQIAVKRMQSGITDEKGPNEFTSEIMVLTKVRHKHLVALLGYCLDRNERLLVYEYMPQGALSKHLFNWKEEGIKPLEWKTRLSIALDVARGVEYLHGLTQQIFIHRDLKPSNILLGDDLRAKVSDFGLVRLAPEGKASFQTRLAGTFGYMAPEYAATGRLTTKADVYSFGVILMEIVTGRKALDESQPEENIHLVTWFRRMLLNKDSFRTIIDKTIEVDEETYESINTVAELAGHCSAREPYQRPDMSHAVNVLSSLVEVWKPIEQDVDDVYGINFDMTLPEALQRWQAFEGKSTFNLTRSPSSLHTSGGNTHSRTSPNVSSSHT 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06575 763 CDD STKc_IRAK 422 695 - -
Vivi5g06575 763 FunFam Leucine-rich repeat receptor-like kinase 184 308 - -
Vivi5g06575 763 FunFam receptor protein kinase TMK1 385 493 - -
Vivi5g06575 763 ProSiteProfiles Protein kinase domain profile. 416 696 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g06575 763 Pfam Protein tyrosine and serine/threonine kinase 419 690 IPR001245 GO:0004672|GO:0006468
Vivi5g06575 763 Gene3D Phosphorylase Kinase; domain 1 395 493 - -
Vivi5g06575 763 SMART serkin_6 416 696 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g06575 763 FunFam receptor protein kinase TMK1 494 711 - -
Vivi5g06575 763 Gene3D Transferase(Phosphotransferase) domain 1 494 712 - -
Vivi5g06575 763 Gene3D Ribonuclease Inhibitor 1 181 IPR032675 -
Vivi5g06575 763 SUPERFAMILY Protein kinase-like (PK-like) 398 702 IPR011009 -
Vivi5g06575 763 ProSitePatterns Protein kinases ATP-binding region signature. 422 444 IPR017441 GO:0005524
Vivi5g06575 763 SUPERFAMILY L domain-like 4 294 - -
Vivi5g06575 763 MobiDBLite consensus disorder prediction 736 763 - -
Vivi5g06575 763 PANTHER OSJNBA0070M12.3 PROTEIN 3 743 - -
Vivi5g06575 763 Gene3D Ribonuclease Inhibitor 184 309 IPR032675 -
Vivi5g06575 763 ProSitePatterns Serine/Threonine protein kinases active-site signature. 541 553 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06575 Vivi-Chr5 172715312 172718171 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06575 330 702 Receptor kinase-like Gene Family AT4G02010 39.737 1.47e-76 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Vivi5g06575 PK_Tyr_Ser-Thr 6.7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06575 K00924 - gmx:100788903 1072.38