Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06574 ATGATAAAAGTTGGATTGGATTTTAGAGACTCATTCAATTTGGTTATACTTTTGGTGTTTTCTATCATAATTATCCCAACAAGATGTCAAGATGTAGAAGTCATGAATATTTTGAAAAGCACTATAAATTCTCCAATCACCTTTCAATGGACAGATCCTGATGTATGCAAATGGAGGCGTATTCAATGTGATTCAAGCAAACGTGTCACTGCAATTCAATTAGGGACTCAGAACCTTCAAGGTTTTCTCCCAAAGGAACTTGTCAAGTTAACGAATTTGCAAAGGTTTGAGTGTCAAAGCAATGCCCTCACAGGTTCATTCCCTTACCTCTCAAAATCATTACAGAGGCTTGTAATTCACGATAATAAATTCAATTTCATTCCTGGCGATTTCTTCACGGGAATGAGCAATTTGCAAGAAGTAAGAATTGACGACAACCCGTTTTCTCCATGGCAGATTCCTAATTCTCTTAGAGATTGTGTTGCGCTCCAAACTTTCAGTGCACAGAGTGCTGGAATTGTTGGGACCATCCCAAATTTTTTTGGCAGAGATGGTCCCTTCCCCGGGTTGATTTTCTTGGCATTGTCTAATAATTACTTAGAAGGTGTTTTGCCTGCAAGTCTTTCTAAAAGTTCAATAGAGAACCTTTTGGTGAATGGCCAAAATAGTAATAACAAACTCAATGGTACCCTTGCTGTGATACAAAATATGGCTTCTTTGAAACAAATATGGGCTAACGGTAACTCATTTACCGGTCCTATACCTGATTTATCTCACCTTGATCAATTATCTGATGTAAATTTAAGAGATAACCAATTGACGGGTGTTGTTCCGCCTTCTCTTGTGAACCTTCCAAGATTGCAAGTGGTGAATTTGACAAACAATTACCTTCAAGGTTCACCTCCCAAGTTTAGAGACGGTATTGGAGTTGATAATAATATGGATGGGAGTAGAAATCAATTTTGCACCAATGTTTCAGGGCAACCTTGTAGTTCTCTTGTGAATGTTTTGTTATCAGTTATTGAACCTTTGGGTTATCCTCTCAAGTTTGCTGAAAGTTGGCAGGGTAATGATCCATGTGCTAATAAATGGTTAGGTATAGTTTGTTCTGGTGGGAATATTTCAATTATAAATTTCCAGAGCATGGGAATAACTGGCACTATTTCTCCTACTTTTGCTAGTATTTCATCTTTAACAAAATTGCTTCTTGCAAACAATAGTCTCATTGGTACAATACCGAACCAACTTACTAGTATGCCTCTTCTACAAGAATTGGATGTTTCTAATAATCATTTATATGGTCGTGTTCCGTCGTTTCATAATGGTGTGGTTCTTAAATTTGGTGGAAATCCGGATATTGGGAAGGATAAACCCAGTAATGCAAGTAGTTATGGGTTTGAAGGTAGTGGTAGTAACAATAATGTTGTCGGCATCACAATTGTAATTTTGGTGGGAGCTGTCATTTTAATTGGTGTTGGGGTATTATTATATATTAAGTTTTGGAAAAGGTCTGGCAATAATTCAAGGAAAAGTTTAAGTCATGATTCAATAATGGTAGATCATAAATATCAATTGGATGATAATATTCTGAATGTAAGTGTTATTGGTGGTGGTGAGGGAGGAGGTGCATTAAGCCCCACTGGTAACATGGTGATTTCAATTCAAGTTTTGAGACAAGTTACACATAATTTTCGTGAGGAAAACATTATTGGAAAGGGTGGTTTTGGCACTGTTTACAAAGGGGAATTGCACGATGGGACACAAATTGCAGTGAAAAGGATGCAATCGGGAATAACAGACGAGAAAGGACCAAATGAATTCACATCAGAGATTATGGTTCTTACAAAAGTCCGACATAAACATTTGGTTGCACTCTTAGGGTATTGCTTAGATAGAAATGAAAGACTCTTGGTCTATGAGTACATGCCTCAAGGTGCTCTAAGTAAACACTTATTCAATTGGAAAGAGGAAGGGATAAAACCACTAGAATGGAAAACGAGGCTTAGTATTGCCTTGGATGTTGCTAGAGGTGTGGAATATCTTCATGGGTTGACCCAACAAATTTTTATCCACAGGGATCTCAAACCATCCAACATTTTACTTGGAGATGATTTACGGGCTAAAGTATCTGACTTTGGATTGGTTCGACTTGCTCCCGAAGGAAAAGCTTCATTTCAAACTAGACTTGCAGGAACTTTTGGATATATGGCACCAGAGTATGCTGCCACCGGAAGACTAACAACAAAGGCCGATGTATATAGTTTTGGTGTAATTCTTATGGAGATCGTAACAGGAAGGAAAGCGCTTGATGAGAGCCAACCAGAAGAGAACATCCACCTTGTAACATGGTTTCGTCGGATGTTATTGAATAAGGATTCATTTCGAACGATCATTGACAAAACAATTGAAGTTGATGAAGAAACATATGAAAGCATCAACACGGTTGCAGAGTTGGCAGGGCATTGTAGTGCAAGGGAGCCTTATCAGCGTCCTGATATGAGTCATGCAGTGAATGTGTTATCATCTCTTGTTGAAGTATGGAAACCTATAGAACAAGATGTTGATGATGTATATGGGATCAACTTTGATATGACATTACCAGAAGCTCTCCAAAGGTGGCAAGCTTTTGAAGGAAAAAGCACATTCAATTTAACACGTTCTCCTTCATCGCTGCATACTAGTGGTGGCAACACACACTCCCGTACATCTCCAAATGTGTCTTCATCACATACATAA 2736 0.3823 MIKVGLDFRDSFNLVILLVFSIIIIPTRCQDVEVMNILKSTINSPITFQWTDPDVCKWRRIQCDSSKRVTAIQLGTQNLQGFLPKELVKLTNLQRFECQSNALTGSFPYLSKSLQRLVIHDNKFNFIPGDFFTGMSNLQEVRIDDNPFSPWQIPNSLRDCVALQTFSAQSAGIVGTIPNFFGRDGPFPGLIFLALSNNYLEGVLPASLSKSSIENLLVNGQNSNNKLNGTLAVIQNMASLKQIWANGNSFTGPIPDLSHLDQLSDVNLRDNQLTGVVPPSLVNLPRLQVVNLTNNYLQGSPPKFRDGIGVDNNMDGSRNQFCTNVSGQPCSSLVNVLLSVIEPLGYPLKFAESWQGNDPCANKWLGIVCSGGNISIINFQSMGITGTISPTFASISSLTKLLLANNSLIGTIPNQLTSMPLLQELDVSNNHLYGRVPSFHNGVVLKFGGNPDIGKDKPSNASSYGFEGSGSNNNVVGITIVILVGAVILIGVGVLLYIKFWKRSGNNSRKSLSHDSIMVDHKYQLDDNILNVSVIGGGEGGGALSPTGNMVISIQVLRQVTHNFREENIIGKGGFGTVYKGELHDGTQIAVKRMQSGITDEKGPNEFTSEIMVLTKVRHKHLVALLGYCLDRNERLLVYEYMPQGALSKHLFNWKEEGIKPLEWKTRLSIALDVARGVEYLHGLTQQIFIHRDLKPSNILLGDDLRAKVSDFGLVRLAPEGKASFQTRLAGTFGYMAPEYAATGRLTTKADVYSFGVILMEIVTGRKALDESQPEENIHLVTWFRRMLLNKDSFRTIIDKTIEVDEETYESINTVAELAGHCSAREPYQRPDMSHAVNVLSSLVEVWKPIEQDVDDVYGINFDMTLPEALQRWQAFEGKSTFNLTRSPSSLHTSGGNTHSRTSPNVSSSHT 911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06574 911 FunFam Receptor-like kinase TMK4 29 327 - -
Vivi5g06574 911 Gene3D Phosphorylase Kinase; domain 1 543 641 - -
Vivi5g06574 911 ProSitePatterns Serine/Threonine protein kinases active-site signature. 689 701 IPR008271 GO:0004672|GO:0006468
Vivi5g06574 911 SMART serkin_6 564 844 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g06574 911 SUPERFAMILY L domain-like 28 304 - -
Vivi5g06574 911 FunFam receptor protein kinase TMK1 533 641 - -
Vivi5g06574 911 PANTHER OSJNBA0070M12.3 PROTEIN 14 891 - -
Vivi5g06574 911 FunFam Leucine-rich repeat receptor-like kinase 332 456 - -
Vivi5g06574 911 MobiDBLite consensus disorder prediction 884 911 - -
Vivi5g06574 911 Gene3D Ribonuclease Inhibitor 333 457 IPR032675 -
Vivi5g06574 911 SUPERFAMILY Protein kinase-like (PK-like) 546 850 IPR011009 -
Vivi5g06574 911 ProSiteProfiles Protein kinase domain profile. 564 844 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g06574 911 Pfam Protein tyrosine and serine/threonine kinase 567 838 IPR001245 GO:0004672|GO:0006468
Vivi5g06574 911 FunFam receptor protein kinase TMK1 642 859 - -
Vivi5g06574 911 CDD STKc_IRAK 570 843 - -
Vivi5g06574 911 ProSitePatterns Protein kinases ATP-binding region signature. 570 592 IPR017441 GO:0005524
Vivi5g06574 911 Pfam Leucine rich repeat N-terminal domain 337 370 IPR013210 -
Vivi5g06574 911 Pfam Leucine rich repeat N-terminal domain 31 64 IPR013210 -
Vivi5g06574 911 Gene3D Transferase(Phosphotransferase) domain 1 642 860 - -
Vivi5g06574 911 SUPERFAMILY L domain-like 333 439 - -
Vivi5g06574 911 Gene3D Ribonuclease Inhibitor 29 328 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06574 Vivi-Chr5 172714879 172718171 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06574 69 846 Receptor kinase-like Gene Family AT5G07280 31.585 1.40e-80 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Vivi5g06574 PK_Tyr_Ser-Thr 9.6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06574 K00924 - gmx:100788903 1296.95