Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06572 ATGGGTGTTCGGTTGAAGATGCAGAATCATCATCATCATCATCTCCATCCTTTGGCTTCGAAGTTACACGAACAAGCGGGGAACAAACGGTTCACATTCATTCAAGCGCATAGAGGCTGGCTTTGGAGGTTTTTGTTGCTATGGATTCTTCTGATGGCGATATTTAGTTATGTTATCTATAGCATTATGGATGTGCATTCTAAAGTTAGAAGGAAAGAGGTTTTGGGTAGTCTTTGTGATCAAAGGGCTAGAATGTTGCAAGATCAGTTTAGTGTTAGTGTTAACCATGTTCATGCTCTTGCGATTCTTGTTTCAACTTTTCATTATTACACAAACCCTTCCGCTATAGACCAGAAAACCTTTGCGGAATATACGGCTAGGACTGCGTTTGAAAGGCCGTTACTTAGTGGAGTGGCTTATGCGCAGAGAGTGGTTAATTCAGAAAGGGAGCAATTTGAGAAGCAACATGGAGTTGTTATTAAGACAATGGAAAGAGAGGCTTCGCAGGTTAAGGATGAGTATGCACCCGTCATATTTGCTCAAGAAACTGTCTCTTATCTCGAGTCTATTGATATGATGTCTGGCGAGGAGGACCGAGAGAACATCATGAGAGCGCGAGCTACTGGGAAAGCTGTTCTGACTAGTCCTTTTAGGTTGTTGGGTTCTCATCATCTTGGCGTGGTTTTAACATTTCCTGTTTACAAATCGAAGCTCCCTCCTAACCCAACAACCGAAGAGCTCATTAAAGCGACTGCAGGATATGTCGGAGGATCCTTTGATGTCGAGTCCCTTGTGGAGAATTTACTCAGTCAACTTGCTGGTCACCAAGCAATTTTGGTGAATGTATACGATATCACGAACTCTACCGACCCTCTAATCATGTATGGCAATCAATACGAAGAAGGTGATGTTTCTCTTGTCCATGAAAGTAAACTTGATTTTGGAGATCCATACAGGAAACATCAAATGATATGTAGATATCACCAGAAGGCTCCGACAAATTGGTTAGCTGTTCTCACTGTAACCCTATTCTTTGTGATTCTTTTGTTAATCGGTTACATTTTATACGGTGCTGGAAATCGTATTGTCAAAGTAGAGGATGATTTCCATGAAATGGAGGAACTAAAAGTTCGAGCTGAAGCAGCTGATGTTGCCAAGTCACAGTTTCTAGCTACTGTCTCTCATGAAATTAGAACACCGATGAATGGCATTTTAGGAATGCTTGGTCTGCTTCTACGCACCGAATTGAATTCTACCCAACGGGACTATGCTCAGACAGCTCAAGCATGTGGAAAGGCACTGATAGCATTAATAAATGAAGTGCTTGACCGAGCTAAAATTGAAGCTGGAAAATTAGAGCTAGAAGCGGTTCCATTTGACCTTCGTTCCATACTTGATGATGTCCTTTCTCTCTTTTCCGAAAAGTCTAGACACAAAGGTTTAGAGCTGGCAGTGTTTGTTTCGGATAAAGTTCCAGATATTGTTATGGGAGATCCCGGGAGATTCAGACAAATAGTAACAAATCTTGTCGGAAATTCGGTTAAATTCACTGAGCGAGGACATATATTCGTTAAGGTCCATTTAGCTGAAAACAGAAAGTCCGCAATGAATGGAAAATTCGAGACTTTTCAAAATGGAGGATCTGAAGGAGTTATGCATATATCCGGCGGTGGTTATAATCTCAAAACCTTGAGTGGATGTGAAGCAGCTGATGAACGCAACAACTGGGATAATTTTAAGCATCTAATTGCCGATGAAGAGTTTTTCTGTGACACATCGACTAAAAAAGTGGCTACTAATGAATCTTATGAGCAAGTAACTTTGATGGTGTGCGTCGAAGACACTGGAGTTGGAATCCCTTTCTCAGCACAAGATAGGATTTTCATGCCATTTGTGCAGGCGGATAGCTCAACTTCAAGAAACTACGGCGGTACCGGCATCGGCTTGAGTATCAGTAAATGCCTGGTTGAACTTATGGGCGGTGAAATAAACTTTATAAGCCGGCCGCAGGTTGGAAGCACTTTTTCATTTACCGCAGATTTTAAAATATTTAAGAAGAATTTAATACCCGACGTGAAGAAGGTTAATTATGAAGATCTACCCTCGAGTTTCGGAGGGCTTAAAGCCATTGTGGTCGATGCAAAACCTGTTAGAGCTGCCGTAACTAGATACCATTTGAAGAGACTTGGGATACAAGCTAAAGTCGCAAATGCCATCAATAAAGCCGTTTCTTTATGCGGGAAAAACGGTTCTTTGACTACAGGGTTATTCCAGCCTGATATTATTTTTGTCGAGAAAGATTCGTGGGTTTGTGGAGAGGACGGGAACTTCAGTGTAGGACAACTAGATTGGAAGCAGAACGGACATATATTTAAGATGCCTCAAATGATCCTTCTTGCGACGAATATTAGCAACGACGAATTCGATAGAGTGAAATCCGCAGGTTTTAGCGACACCGTGATCATGAAGCCGCTGAGAGCCAGTATGGTGGGAGCATGTCTTCAACAAGTTTTAGGGTCAGGCAAGAAGAGACAGCTAGGAAAAGAAATGCCCAACGGTTCAACTTCCGTTCGAAGCCTTCTTTACGGAAAGAAAATTTTGGTGGTTGATGACAATGGAGTGAACCGAAGAGTGGCTGCGGGCGCGTTGAAAAATTTCGGAGCAGACGTGAAGTGTGCAGATAGTGGCAAAGCTGCTCTTGAAATGCTTCAATTCCCTCATGATTTCGATGCTTGTTTCATGGATATTCAAATGCCCGAAATGGACGGGTTTGAAGCGACGCGACGAATTCGGGGGATGGAGAGGACGGCAAACGAGAATACGAACACGAACGGTGAAGCATGTAGAGATGCGAAAAGTGAGTTCCACTTGCCGATATTGGCGATGACAGCGGATGTAATCCATGCAACATATGAGGAGTGTTTGAAATGTGGAATGGATGGATATGTTTCAAAACCATTTGAAGAAGAGAATCTTTATCAAGCAGTTGCAAAGTTTTTCAAAACAAAGCCTACTATTACAACAATAGATTCATAA 3036 0.4216 MGVRLKMQNHHHHHLHPLASKLHEQAGNKRFTFIQAHRGWLWRFLLLWILLMAIFSYVIYSIMDVHSKVRRKEVLGSLCDQRARMLQDQFSVSVNHVHALAILVSTFHYYTNPSAIDQKTFAEYTARTAFERPLLSGVAYAQRVVNSEREQFEKQHGVVIKTMEREASQVKDEYAPVIFAQETVSYLESIDMMSGEEDRENIMRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPPNPTTEELIKATAGYVGGSFDVESLVENLLSQLAGHQAILVNVYDITNSTDPLIMYGNQYEEGDVSLVHESKLDFGDPYRKHQMICRYHQKAPTNWLAVLTVTLFFVILLLIGYILYGAGNRIVKVEDDFHEMEELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLGLLLRTELNSTQRDYAQTAQACGKALIALINEVLDRAKIEAGKLELEAVPFDLRSILDDVLSLFSEKSRHKGLELAVFVSDKVPDIVMGDPGRFRQIVTNLVGNSVKFTERGHIFVKVHLAENRKSAMNGKFETFQNGGSEGVMHISGGGYNLKTLSGCEAADERNNWDNFKHLIADEEFFCDTSTKKVATNESYEQVTLMVCVEDTGVGIPFSAQDRIFMPFVQADSSTSRNYGGTGIGLSISKCLVELMGGEINFISRPQVGSTFSFTADFKIFKKNLIPDVKKVNYEDLPSSFGGLKAIVVDAKPVRAAVTRYHLKRLGIQAKVANAINKAVSLCGKNGSLTTGLFQPDIIFVEKDSWVCGEDGNFSVGQLDWKQNGHIFKMPQMILLATNISNDEFDRVKSAGFSDTVIMKPLRASMVGACLQQVLGSGKKRQLGKEMPNGSTSVRSLLYGKKILVVDDNGVNRRVAAGALKNFGADVKCADSGKAALEMLQFPHDFDACFMDIQMPEMDGFEATRRIRGMERTANENTNTNGEACRDAKSEFHLPILAMTADVIHATYEECLKCGMDGYVSKPFEEENLYQAVAKFFKTKPTITTIDS 1011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06572 1011 FunFam Histidine kinase 4 357 448 - -
Vivi5g06572 1011 CDD HisKA 385 446 IPR003661 GO:0000155|GO:0007165
Vivi5g06572 1011 Gene3D - 63 115 - -
Vivi5g06572 1011 ProSiteProfiles Response regulatory domain profile. 708 838 IPR001789 GO:0000160
Vivi5g06572 1011 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 439 678 IPR036890 -
Vivi5g06572 1011 PRINTS Bacterial sensor protein C-terminal signature 626 636 IPR004358 GO:0016310|GO:0016772
Vivi5g06572 1011 PRINTS Bacterial sensor protein C-terminal signature 643 661 IPR004358 GO:0016310|GO:0016772
Vivi5g06572 1011 PRINTS Bacterial sensor protein C-terminal signature 667 680 IPR004358 GO:0016310|GO:0016772
Vivi5g06572 1011 PRINTS Bacterial sensor protein C-terminal signature 608 622 IPR004358 GO:0016310|GO:0016772
Vivi5g06572 1011 ProSiteProfiles Response regulatory domain profile. 865 1000 IPR001789 GO:0000160
Vivi5g06572 1011 SMART HKATPase_4 497 683 IPR003594 -
Vivi5g06572 1011 Pfam His Kinase A (phospho-acceptor) domain 385 450 IPR003661 GO:0000155|GO:0007165
Vivi5g06572 1011 FunFam Histidine kinase 4 116 331 - -
Vivi5g06572 1011 Gene3D - 359 448 - -
Vivi5g06572 1011 SMART HisKA_10 385 450 IPR003661 GO:0000155|GO:0007165
Vivi5g06572 1011 SMART CHASE_2 112 297 IPR006189 -
Vivi5g06572 1011 SUPERFAMILY CheY-like 704 839 IPR011006 -
Vivi5g06572 1011 SUPERFAMILY CheY-like 863 1000 IPR011006 -
Vivi5g06572 1011 ProSiteProfiles Histidine kinase domain profile. 392 683 IPR005467 -
Vivi5g06572 1011 CDD REC_hyHK_CKI1_RcsC-like 866 996 - -
Vivi5g06572 1011 Pfam CHASE domain 115 295 IPR006189 -
Vivi5g06572 1011 Coils Coil 435 455 - -
Vivi5g06572 1011 Gene3D - 859 1007 - -
Vivi5g06572 1011 Pfam Response regulator receiver domain 866 996 IPR001789 GO:0000160
Vivi5g06572 1011 Gene3D - 449 687 IPR036890 -
Vivi5g06572 1011 CDD HATPase_EvgS-ArcB-TorS-like 502 681 - -
Vivi5g06572 1011 ProSiteProfiles CHASE domain profile. 112 324 IPR006189 -
Vivi5g06572 1011 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 497 682 IPR003594 -
Vivi5g06572 1011 SMART REC_2 864 996 IPR001789 GO:0000160
Vivi5g06572 1011 Gene3D CHASE domain 116 331 IPR042240 -
Vivi5g06572 1011 PANTHER TWO-COMPONENT HISTIDINE KINASE 65 997 - -
Vivi5g06572 1011 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 371 451 IPR036097 GO:0000155|GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06572 Vivi-Chr5 172661766 172666946 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06572 27 1004 Histidine Kinase Gene Family AT2G01830 70.213 0.0 1369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi5g06572 HATPase_c 9.9e-31 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06572 K14489 - gmx:100818481 1607.81