Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06569 ATGCTAGGTTCATTACCTATACTGCCTCTACCGGCTCCTCCTATCGATGGAAATCTCGGTCCTCTCCCTGAGGCTCAACTCACTCAGGAGGAGGTAGAGGAAAGGAATGAGAAATCCAGCGTTGAGGAAGTTGCGCCGACATCGGTTGCCACACATACTAGAACTATTGGAATAATTCATCCCCCTCCGGATATTAGAACCATTGTTGATAAAACCTCCCAGTTTGTCGCTAAAAATGGTATAGATTTTGAGAAGAGAATTGTTGCTAATAATGCGGGGAATGCTAAGTTTAATTTTCTGAATTCGTCGGATCCGTATCATGCTTATTATCAGCATAGGCTGGCTGAGTTTCGTGCGCAGAATCAGTCTTCTACTCAACTGCCTGGGGATTCGGATTTACCGGAATCAGCTACACCTGCGCCGGCTACTGATAGTAATAGTAATGATGTAGTGATGGCTGAGAAGCCTGATGTTTCTGCCCAGTTTAGACCGGTAAGGAAAGTACTTGACCCCCCTGAGGCTGAGCAGTATACAGTTAGGCTTCCTGAAGGAATTACAGGGGAAGAGCTTGATATAATAAAGCTTACAGCACAATTTGTGGCGAGAAATGGGAAATCGTTTTTGACAGGATTGACAAGTAGGGAAATTAATAATCCTCAGTTTCATTTCATGAAACCAACCCATAGTATGTTTACATTTTTCACTTCCCTTGCCGATGCGTATTCAAAGGTTTTGATGCCTCAGAAGGGTTTGACAGAGAAGTTGAAGAAGAGTGTCCCTGACATGACAACTGTGCTTGAAAGGTGTGTGAATAGGTTGGAATGGGAGCGTTCGCAAGAGCAAGCTAGGCAAAAGGCAGAAGATGAGATAGAGCAAGAGAGAATACAGATGGCTATGATTGATTGGCATGATTTTGTGGTGGTTGAAGCAATAGATTTTGCTGACGAGGAGGATGAAGAATTACCTCCTCCAATGACCCTTGAGGAGGTTATAAGGAGAAGCAAGATGACGCCTATGGAAGAAGATATCGTTGAGCCAGGAAAGGAAGTAGAAATGGAAATGGACGAAGAAGAGGCCCAGCTTGTTGAAGAGGGAATGAGAGCTGCTAGTTTGGAAGACAATGATGAAGTGAAGAAGAATGAAGTCAGGGTTACTGAAGACCCTGAACCACCAATGAGGATTGTGAAGAACTGGAAGAGACCAGAAGACAGGCTTCCTGCAGATAAAGATTCAACCAAGTTTGTGGTTTCTCCTATCACTGGTGAACTGATTCCTATTAGTGAAATGTCAGAGCATATGCGAATTTCTCTCATTGATCCCAAGTATAAAGAACAAAAAGAAAGGATGTTTGCTAAAATTCGGGAAACCACTCTGGCACAGGATGATGAAATCTCAAGAAACATTGTTGGACTTGCTCGGACCCGTCCTGATATTTTTGGTACTACTGAGGAAGAGGTTTCCAATGCCGTCAAAGCTGAAATTGAGAAGAAAAATGACGAGCAACCTAAGCAGGTTATTTGGGATGGTCACAGTGGTAGTATCGGCCGTACTGCAAACCAAGCAATGTCACAGAATATTGGGATGGAGGATCAAAATGATGCTTCTAATAATGAATTTAAAAACCTTCCTGGTCCAGCTGCACCTCCTCCAAGACCTGGTATGCCTTCAATTCGTCCTCTTCCGCCACCACCTGGACTAGCTTTAAATCTACCCCGTGGTCCTATGAATAACATGCAGTATTCTAATCCTAACAACAGTGGCCTTCCAATGCCTCCACCCAGACCACCGGGCATGCACATGATGCAATCTCTCCGACCAGCTCCCCCTCCTCCAATGCAAATGTCCTCTGGACAGCATCCCATGATGGGTGGTCAACCACACCAAATGCATCCATCAATTCCTATGAATAACCAAGGAATTCCAATTCCTCCACCACCTGGATCTCAATTCACTCCTATTCCTGTTCCACGACCTTATGTTCCTCTCTCTCATCCTCCATCAGGGATGCCTATGATGCATCCACCACCTCCCCCTCAAGGATTACCACCACCGCCGCCACCTGAGGAAGCTCCTCCACCGCTTCCAGAGGAACCAGAACCCAAGAGGCAGAAGCATGATGATTCTGCTCTGATCCCCGAGGATAAATTTCTGGCTCAACATCCGGGACCTGCTCGCATCAGTATATCTGTTCCTAATGTTGATGAAGGAAATCTCAAAGGACAAGTTCTGGAAATAACTGTGCAATCTCTGTCTGAAACTGTTGGTGGCCTGAAAGAAAAAATTGCTGGGGAGATCCAACTCCCTGCTAACAAGCAGAAATTGAGTGGAAAGCCAGGCTTTCTCAAGGACAATTTGTCACTTGCTCATTATAATCTTAGTGGAGGAGAAACACTCTCTTTAGCATTGAGAGAGCGTGGTGGTAGAAAGAGATGA 2433 0.4505 MLGSLPILPLPAPPIDGNLGPLPEAQLTQEEVEERNEKSSVEEVAPTSVATHTRTIGIIHPPPDIRTIVDKTSQFVAKNGIDFEKRIVANNAGNAKFNFLNSSDPYHAYYQHRLAEFRAQNQSSTQLPGDSDLPESATPAPATDSNSNDVVMAEKPDVSAQFRPVRKVLDPPEAEQYTVRLPEGITGEELDIIKLTAQFVARNGKSFLTGLTSREINNPQFHFMKPTHSMFTFFTSLADAYSKVLMPQKGLTEKLKKSVPDMTTVLERCVNRLEWERSQEQARQKAEDEIEQERIQMAMIDWHDFVVVEAIDFADEEDEELPPPMTLEEVIRRSKMTPMEEDIVEPGKEVEMEMDEEEAQLVEEGMRAASLEDNDEVKKNEVRVTEDPEPPMRIVKNWKRPEDRLPADKDSTKFVVSPITGELIPISEMSEHMRISLIDPKYKEQKERMFAKIRETTLAQDDEISRNIVGLARTRPDIFGTTEEEVSNAVKAEIEKKNDEQPKQVIWDGHSGSIGRTANQAMSQNIGMEDQNDASNNEFKNLPGPAAPPPRPGMPSIRPLPPPPGLALNLPRGPMNNMQYSNPNNSGLPMPPPRPPGMHMMQSLRPAPPPPMQMSSGQHPMMGGQPHQMHPSIPMNNQGIPIPPPPGSQFTPIPVPRPYVPLSHPPSGMPMMHPPPPPQGLPPPPPPEEAPPPLPEEPEPKRQKHDDSALIPEDKFLAQHPGPARISISVPNVDEGNLKGQVLEITVQSLSETVGGLKEKIAGEIQLPANKQKLSGKPGFLKDNLSLAHYNLSGGETLSLALRERGGRKR 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06569 810 ProSiteProfiles Ubiquitin domain profile. 751 807 IPR000626 GO:0005515
Vivi5g06569 810 Gene3D Surp module 185 243 IPR035967 GO:0003723|GO:0006396
Vivi5g06569 810 MobiDBLite consensus disorder prediction 658 693 - -
Vivi5g06569 810 ProSiteProfiles SURP motif repeat profile. 192 234 IPR000061 GO:0003723|GO:0006396
Vivi5g06569 810 SUPERFAMILY Surp module (SWAP domain) 43 118 IPR035967 GO:0003723|GO:0006396
Vivi5g06569 810 SUPERFAMILY Ubiquitin-like 705 808 IPR029071 -
Vivi5g06569 810 Gene3D - 699 809 - -
Vivi5g06569 810 Coils Coil 354 374 - -
Vivi5g06569 810 MobiDBLite consensus disorder prediction 529 561 - -
Vivi5g06569 810 MobiDBLite consensus disorder prediction 658 723 - -
Vivi5g06569 810 SMART surpneu2 66 119 IPR000061 GO:0003723|GO:0006396
Vivi5g06569 810 SMART surpneu2 190 243 IPR000061 GO:0003723|GO:0006396
Vivi5g06569 810 MobiDBLite consensus disorder prediction 121 148 - -
Vivi5g06569 810 Pfam Pre-mRNA splicing factor PRP21 like protein 261 473 IPR022030 -
Vivi5g06569 810 FunFam Splicing factor 3A subunit 1 52 123 - -
Vivi5g06569 810 SUPERFAMILY Surp module (SWAP domain) 169 242 IPR035967 GO:0003723|GO:0006396
Vivi5g06569 810 FunFam Probable splicing factor 3A subunit 1 699 809 - -
Vivi5g06569 810 Pfam Surp module 66 117 IPR000061 GO:0003723|GO:0006396
Vivi5g06569 810 Pfam Surp module 190 241 IPR000061 GO:0003723|GO:0006396
Vivi5g06569 810 CDD Ubl_SF3a120 723 803 IPR035563 -
Vivi5g06569 810 MobiDBLite consensus disorder prediction 543 561 - -
Vivi5g06569 810 MobiDBLite consensus disorder prediction 694 713 - -
Vivi5g06569 810 SMART ubq_7 731 803 IPR000626 GO:0005515
Vivi5g06569 810 MobiDBLite consensus disorder prediction 586 614 - -
Vivi5g06569 810 Coils Coil 276 296 - -
Vivi5g06569 810 FunFam Splicing factor 3a, subunit 1 185 243 - -
Vivi5g06569 810 Gene3D Surp module 52 125 IPR035967 GO:0003723|GO:0006396
Vivi5g06569 810 ProSiteProfiles SURP motif repeat profile. 68 110 IPR000061 GO:0003723|GO:0006396
Vivi5g06569 810 MobiDBLite consensus disorder prediction 581 614 - -
Vivi5g06569 810 Pfam Ubiquitin family 738 805 IPR000626 GO:0005515
Vivi5g06569 810 PANTHER SPLICEOSOME ASSOCIATED PROTEIN 114/SWAP SPLICING FACTOR-RELATED 46 747 IPR045146 GO:0003723|GO:0045292
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06569 Vivi-Chr5 172623459 172627614 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06569 738 807 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 37.143 8.79e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06569 K12825 - gmx:100790309 1177.93