Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06566 ATGGGGAAGAAGAAGAAGAGAGTCGCTTCAAAAGTATGGTGTTATTACTGCGATCGTGAATTCGAGGACGAGAAGATCTTGGTTCAGCATCAGAAAGCTAAGCACTTCAAGTGCCATGTTTGTCATAAGAAGCTTTCAACTGCTGGTGGTATGTCCATTCACGTTCTTCAGGTCCACAAGGAAAACGTCACCAAGGTGCCGAATGCAAAACCTGGTAGAGAGAGTACAGAGATTGAAATATATGGAATGCAAGGGATTCCACCAGATGTATTGGCTTCTCATTATGGAGATGAAGATGATGATGTTCCCTCAAAGACAGCCAAGGTGGATATCCCATCAACTCCATTTTTAGGTGGAATGGCACCACCTCCTATGGGTGCCGGATATCCTCCCCGATCAATGATGGGAGCCATTCGACCAATGTATAATCCTACTCTACAAGTACCTCCTAATGCTTGGGGAGTGGCTCCACCTCGGCCTCAGCCATGGTATCCTCAGGCTCCAGCTGCTTCAATTCCCCCTCCTGTTCCATATGCACATCAACCATTATTTCCTGTGCAGAATGTGAGGCCTCCAATGTCATCAACTAATTCACCCGCATTACAAGCTCAGATTGCTCCTCCTGGACTGCCAACATCTACACCTGTCCCAGTTTCACAGCCTTTATTTCCCGTTGTTGGAAATAATCACACAACGGCTCAAAGTTCACCATATTCTGCCGCACCTCTGTCGTCAACTGTTCCATCAGGAACTCCTGTGTTTTCTTCAAATGTCCCTATTGATGCACATTTGGGCATTAACTCTTTGACTAGTTATCAAGCAATAGGGCTTCAAGGCGGGACAGCAAGTAACTCACATTCTTACGCGTCTGGCCCAAATACCGGTGGTCCTTCAATTGGACCTCCCCCAGTAATTTCAAACAAAGCTCCTGCTACTCAGCCCGCCACTAACGAAGTCTACTTAGTTTGGGATGACGAGGCAATGTCCATGGAGGAAAGAAGAATGTCTTTAACAAAATATCAGGTGCATGATGAAAGTAGCCAGGTAAGTCATACTACCTTTTTAATACATGGAGTTGCTTTCACATCTAACCAGATGAGTAGGCTTTATGATTTCTATTTTCAGATTCAGTTGTTTACATATATTTAA 1149 0.4473 MGKKKKRVASKVWCYYCDREFEDEKILVQHQKAKHFKCHVCHKKLSTAGGMSIHVLQVHKENVTKVPNAKPGRESTEIEIYGMQGIPPDVLASHYGDEDDDVPSKTAKVDIPSTPFLGGMAPPPMGAGYPPRSMMGAIRPMYNPTLQVPPNAWGVAPPRPQPWYPQAPAASIPPPVPYAHQPLFPVQNVRPPMSSTNSPALQAQIAPPGLPTSTPVPVSQPLFPVVGNNHTTAQSSPYSAAPLSSTVPSGTPVFSSNVPIDAHLGINSLTSYQAIGLQGGTASNSHSYASGPNTGGPSIGPPPVISNKAPATQPATNEVYLVWDDEAMSMEERRMSLTKYQVHDESSQVSHTTFLIHGVAFTSNQMSRLYDFYFQIQLFTYI 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06566 382 CDD SUF4-like 11 92 - -
Vivi5g06566 382 ProSitePatterns Zinc finger C2H2 type domain signature. 38 59 IPR013087 -
Vivi5g06566 382 ProSiteProfiles Zinc finger BED-type profile. 7 66 IPR003656 GO:0003677
Vivi5g06566 382 SMART c2h2final6 36 59 IPR013087 -
Vivi5g06566 382 SMART c2h2final6 12 35 IPR013087 -
Vivi5g06566 382 MobiDBLite consensus disorder prediction 285 312 - -
Vivi5g06566 382 ProSitePatterns Zinc finger C2H2 type domain signature. 14 35 IPR013087 -
Vivi5g06566 382 Gene3D Classic Zinc Finger 2 63 - -
Vivi5g06566 382 PANTHER ZINC FINGER PROTEIN 207 1 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06566 Vivi-Chr5 172602452 172606257 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06566 1 372 C2H2 Transcription Factor Family AT1G30970 61.757 8.14e-144 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi5g06566 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06566 - - tpra:123918401 662.144