Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06564 ATGGACAAATCAGGTGAGATTCAACAAGAGCAAGAAAATGTGACTGGAGTTGCACCATGTGCTAGTCAAATGGCTTATTCTCACAACCAGAATGATCCTTTGGTAGCTTCTGGTCCACCTTTTGTTGCTGTTCCTACCCCAGCTCAACCTCTAGCCGCGTTCTCTAATTCCATCGACCAATTGCAGCAGCAGCAAGATTTCCACCATCAACTACAACAACAGCAACAGCAGCAACTTAAGGTGTTCTGGGAAAACCAAATGCAAGAAATTGTCCAAACAAATTGCTTTTCAAAACATAGTTTCCCACCTACTCATATAAAGAGAATAATGAAAATGGATGAAGATGTTCAGTTGGTTTCAGCAAATGCTCCAGTCTTATTTGCAAAAGCATGTGAAATGTTTCTATTAGATGTGACTTTGCGATCTTGGTTTCATGCGAAAGAGAACAAAAGAAGTAAACTACAAAAGAATGATATAGCAGCTGCTATTGAAAATATTGCTGCTTTCGATTTCTTGCTTGATATCATTCCAAAAGATGAATTGAAAGAAGAGGAAGGGCCTGGAATTGCAGAGTCAACTATTCCAATAGCAGAGGGGCATGGAATTGCCCAAACGGGTCCTGCAGCTGATCTCCCACCACAACATCCTGTAGGTTCTACCGGGATGGTCATGGGAAACCCATTTGATCAAGCAGCACTATATTCTACCCTTCATCCTCAACCGCCAAATCCAAACCCACGGCCACCGCAACAACAAAGTACAACACTATATTCTACCATTCCAATAGAAGAGGGGCGTGGAATTGAACTGTCTACTATTCCAATAGCAGAGGGGCTTAGAATTGCACAGTCTACTATTCCAATAGCAGATGGGCTTGGAATTGCACAATCTAATATTCCAATAACGGGTCCTGCAAACCAAATGCAAGAAATTATCCAAACAGATTGCTTTTCAAAACATAGTTTCCCACCTACTCGTATAAAGAAAATAATGAAAATGGATAAAGATGTCCTGCAGGTTTCAGCAGATGCTCCAGTCTTATTTGCAAAAGCATGCGAAATGTTTATATTTGATTTGACTTCGCAATCTTGGACTCAGGCGAAAGAGATCAAAAGAAATACACTACAAAAGAGTCATGTAGCAGCTATTATTGCAAGTAATGTTGCTTTCAATTTCTTGGTTGATATCATTCCAAAAGATGAATTGAAAGAAGAGGAAGGGCCTGGAATTCTTGGATTTGCACAGTCTACTATTCCAATAATGGGTCCTGCAGCTGATCTTCCATATAATGATGTCCCACCACAACATCCTGTAGGCTCTACCGAGATGATCATGGGAAATCCAATTGATCAAGCAACACTGTATTCTACCTTGCAGCCAAATCCAAACCCACAGCCAACGCAACAACAAAGTACAACACTACATTCTACCCAGTTGCCTCGACCTCCTTATGAGGCTATGAGCTCTTTTATGGAGTTACTCTTAGGTGCTGTTTACTTTTCAAGTATTGTTGTGTAA 1518 0.4071 MDKSGEIQQEQENVTGVAPCASQMAYSHNQNDPLVASGPPFVAVPTPAQPLAAFSNSIDQLQQQQDFHHQLQQQQQQQLKVFWENQMQEIVQTNCFSKHSFPPTHIKRIMKMDEDVQLVSANAPVLFAKACEMFLLDVTLRSWFHAKENKRSKLQKNDIAAAIENIAAFDFLLDIIPKDELKEEEGPGIAESTIPIAEGHGIAQTGPAADLPPQHPVGSTGMVMGNPFDQAALYSTLHPQPPNPNPRPPQQQSTTLYSTIPIEEGRGIELSTIPIAEGLRIAQSTIPIADGLGIAQSNIPITGPANQMQEIIQTDCFSKHSFPPTRIKKIMKMDKDVLQVSADAPVLFAKACEMFIFDLTSQSWTQAKEIKRNTLQKSHVAAIIASNVAFNFLVDIIPKDELKEEEGPGILGFAQSTIPIMGPAADLPYNDVPPQHPVGSTEMIMGNPIDQATLYSTLQPNPNPQPTQQQSTTLHSTQLPRPPYEAMSSFMELLLGAVYFSSIVV 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06564 505 MobiDBLite consensus disorder prediction 456 480 - -
Vivi5g06564 505 FunFam Nuclear transcription factor Y subunit gamma 66 178 - -
Vivi5g06564 505 Gene3D Histone, subunit A 62 178 IPR009072 GO:0046982
Vivi5g06564 505 Gene3D Histone, subunit A 298 399 IPR009072 GO:0046982
Vivi5g06564 505 SUPERFAMILY Histone-fold 97 181 IPR009072 GO:0046982
Vivi5g06564 505 FunFam Nuclear transcription factor Y subunit C 304 399 - -
Vivi5g06564 505 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 100 163 IPR003958 -
Vivi5g06564 505 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 321 381 IPR003958 -
Vivi5g06564 505 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 64 200 - -
Vivi5g06564 505 SUPERFAMILY Histone-fold 319 402 IPR009072 GO:0046982
Vivi5g06564 505 MobiDBLite consensus disorder prediction 233 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06564 Vivi-Chr5 172587028 172589019 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06564 305 419 CCAAT-HAP5 Transcription Factor Family AT1G56170 58.261 3.24e-37 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Vivi5g06564 CBFD_NFYB_HMF 3e-15 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06564 K08066 - vvo:131606040 917.916