Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06563 ATGTCTTCTTCTTCTGTCACACAAACAAAAACAGAACAACAACATTTGATGAAATCGAGAAAACCCAGAAACCAAATCCAAAACCACCACAAACCCATTTCAGAAATGGATCAACAAACCCAAACCACTCGTTCCAACTTCACAATCTCATCTCTTCTTCTCTCCACACTCTCCAATGAAACCGCTGTTTCTCAGCAACCCACCAACAAAAAGATCAACTTTTTATCTGCGGCAGCTAGTTTCAGAGGTTTGGGATGCACTGCCGGGGCTTCTCAGCAAGTGTCGGTGCCGGCGGTGATTCGTGCTTCTGCAGATTGGACTCATCAAGGGAAGAAAACCAGAAAAAAGAAGCATAAGAGGGGTTCTGCAGGAGGAAGTAGCAGGAATAGTAGTAATGATGGTTCTTCTGCTGCTACTTGTGTTGATTTTCAAGATGTTTGGTGTGGACCTGCTGCTTCTGTTGATTGTGTGGTTTCAAAGAAGAATGTGTCTTCAAGGGCTAAGATTGATTTGGAAAAGATAACTCACAGAGAGCCTTCATCTTCATTCCGAAGGCGTACTACTACTGTCTATCCAGAAGCCTTCTCTTTTCCGGATACGGATCCTGAAATTTTCACGGCATGCTCTTTTGGAACTTCAGCATACCCTCGCCATATCAGAGATCTCTCTTCTGATGATTTATCTGAGATAATGGTGCTTCAAGGAAGAATACTAATGGGAGGAGGACGATACAATTCGCGCGACCTTTTCAGAGATTTGAGACTAGATGTTGATAACATGTCATATGAGCAATTGCTTGAACTTGGTGAGAGAATCGGTCATGTCAATACTGGACTTAAACAAGATGAAATGGAACCTCACATAAGGAAAACTAAACTTCGATTCTCCGATGATGCATCAAAACATCAAGTAGACAAAAAATGCAGCATTTGTCAGGAGGAGTTTGAAGAAGATGATGAGATTGGGAAGCTGAAGTGTGATCATTTGTATCACTTTGAATGCATACAACAATGGGTTGCACACAAAAATTTCTGTCCTGTGTGTAAGGAGCAGGTTGCAGCTAGACATTGA 1071 0.4202 MSSSSVTQTKTEQQHLMKSRKPRNQIQNHHKPISEMDQQTQTTRSNFTISSLLLSTLSNETAVSQQPTNKKINFLSAAASFRGLGCTAGASQQVSVPAVIRASADWTHQGKKTRKKKHKRGSAGGSSRNSSNDGSSAATCVDFQDVWCGPAASVDCVVSKKNVSSRAKIDLEKITHREPSSSFRRRTTTVYPEAFSFPDTDPEIFTACSFGTSAYPRHIRDLSSDDLSEIMVLQGRILMGGGRYNSRDLFRDLRLDVDNMSYEQLLELGERIGHVNTGLKQDEMEPHIRKTKLRFSDDASKHQVDKKCSICQEEFEEDDEIGKLKCDHLYHFECIQQWVAHKNFCPVCKEQVAARH 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06563 356 MobiDBLite consensus disorder prediction 105 137 - -
Vivi5g06563 356 MobiDBLite consensus disorder prediction 1 42 - -
Vivi5g06563 356 SMART ring_2 308 348 IPR001841 -
Vivi5g06563 356 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 11 352 IPR045191 GO:0061630
Vivi5g06563 356 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 273 354 IPR013083 -
Vivi5g06563 356 SUPERFAMILY RING/U-box 307 352 - -
Vivi5g06563 356 Pfam Ring finger domain 307 349 IPR001841 -
Vivi5g06563 356 ProSiteProfiles Zinc finger RING-type profile. 308 349 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06563 Vivi-Chr5 172535674 172538283 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06563 14 263 C3H Transcription Factor Family AT1G73760 40.000 1.06e-38 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06563 - - cam:101510167 434.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g00292 4 6587040 6590180 Vivi5g06563 5 172535674 172538283 ECH
Vivi5g06563 5 172535674 172538283 Vivi5g06563 5 172535674 172538283 ECH