Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06562 ATGTCTTCTTCTTCTGTCACACAAACAAAAACAGAACAACAACATTTGATGAAATCGAGAAAACCCAGAAACCAAATCCAAAACCACCACAAACCCATTTCAGAAATGGATCAACAAACCCAAACCACTCGTTCCAACTTCACAATCTCATCTCTTCTTCTCTCCACACTCTCCAATGAAACCGCTGTTTCTCAGCAACCCACCAACAAAAAGATCAACTTTTTATCTGCGGCAGCTAGTTTCAGAGGTTTGGGATGCACTGCCGGGGCTTCTCAGCAAGTGTCGGTGCCGGCGGTGATTCGTGCTTCTGCAGATTGGACTCATCAAGGGAAGAAAACCAGAAAAAAGAAGCATAAGAGGGGTTCTGCAGGAGGAAGTAGCAGGAATAGTAGTAATGATGGTTCTTCTGCTGCTACTTGTGTTGATTTTCAAGATGTTTGGTGTGGACCTGCTGCTTCTGTTGATTGTGTGGTTTCAAAGAAGAATGTGTCTTCAAGGGCTAAGATTGATTTGGAAAAGATAACTCACAGAGAGCCTTCATCTTCATTCCGAAGGCGTACTACTACTGTCTATCCAGAAGCCTTCTCTTTTCCGGATACGGATCCTGAAATTTTCACGGCATGCTCTTTTGGAACTTCAGCATACCCTCGCCATATCAGAGATCTCTCTTCTGATGATTTATCTGAGATAATGGTGCTTCAAGGAAGAATACTAATGGGAGGAGGACGATACAATTCGCGCGACCTTTTCAGAGATTTGAGACTAGATGTTGATAACATGTCATATGAGCAATTGCTTGAACTTGGTGAGAGAATCGGTCATGTCAATACTGGACTTAAACAAGATGAAATGGAACCTCACATAAGGAAAACTAAACTTCGATTCTCCGATGATGCATCAAAACATCAAGTAGACAAAAAATGCAGCATTTGTCAGGAGGAGTTTGAAGAAGATGATGAGGTTGGGAGGCTGAAGTGTGATCATTTGTATCACTTTGAATGCATACAACAATGGGTTGCACACAAAAATTTCTGTCCTGTGTGTAAGGAGCAGGTTGCAGCTAGACATTGA 1071 0.422 MSSSSVTQTKTEQQHLMKSRKPRNQIQNHHKPISEMDQQTQTTRSNFTISSLLLSTLSNETAVSQQPTNKKINFLSAAASFRGLGCTAGASQQVSVPAVIRASADWTHQGKKTRKKKHKRGSAGGSSRNSSNDGSSAATCVDFQDVWCGPAASVDCVVSKKNVSSRAKIDLEKITHREPSSSFRRRTTTVYPEAFSFPDTDPEIFTACSFGTSAYPRHIRDLSSDDLSEIMVLQGRILMGGGRYNSRDLFRDLRLDVDNMSYEQLLELGERIGHVNTGLKQDEMEPHIRKTKLRFSDDASKHQVDKKCSICQEEFEEDDEVGRLKCDHLYHFECIQQWVAHKNFCPVCKEQVAARH 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06562 356 MobiDBLite consensus disorder prediction 105 137 - -
Vivi5g06562 356 MobiDBLite consensus disorder prediction 1 42 - -
Vivi5g06562 356 SUPERFAMILY RING/U-box 307 352 - -
Vivi5g06562 356 Pfam Ring finger domain 307 349 IPR001841 -
Vivi5g06562 356 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 11 352 IPR045191 GO:0061630
Vivi5g06562 356 FunFam E3 ubiquitin-protein ligase rnf12-A 275 354 - -
Vivi5g06562 356 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 273 354 IPR013083 -
Vivi5g06562 356 ProSiteProfiles Zinc finger RING-type profile. 308 349 IPR001841 -
Vivi5g06562 356 SMART ring_2 308 348 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06562 Vivi-Chr5 172477474 172538297 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06562 14 263 C3H Transcription Factor Family AT1G73760 40.000 1.07e-38 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06562 - - cam:101510167 434.876