Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06559 ATGGAAAACTTTTCTTCTCGACCACTGTCAATGAACAAAAATGTGTCATCTGCGGTTCCCTTCATCGCTTCTACCCAATCTAACACCACCGCCTCTAGGATGGCGTACATGGAACGCCTTGTTCGTGAACTCAATAATTCTGATCTGCGAGAAAACGCTATTCGTGTCCTCTCCAAGAGGACTGACTTATTCATGGAACTTGCACCTTTATTGTGGAATTCTTTTGGTACCATTGCGGTACTTTTACAGGAAATAGTTTCAATATATCCTAATCTTTCACCACCAAATCTTAATTCTGCGCAATCAACTCGAGTGTGCAATATTCTTGCACTACTTCAGTGTGTGGCATCTCATCCTGATACAAAAATGCTGTTCATCGATGCTAATATACCATTGTATTTGTACTCCTTCCTTAAAACAAGAAAAGAGTTACCACAATTTGAGAATTTGAGGCTTGCTAGTCTTGGAGTCATTGGTGCCTTGGTGAAGGTTAACACCAAAGAAGTAATAAGTTTCCTTCTTTCAAGTGAGGTAATTCCATTGTGCTTGAGCAATATGGAAATCGGCAAAGAAATGTCAAAAACTATTGCAACATTTATAATTGAGAAAATTCTAGCAGATGAAGATGGTTTGGCTTATGTTTGTGCTACAGTAGAACGATTTTTTGCAGTAAGTCGAGTTTTGGACATGATGTTGGAAAATCTTCAGAGACAGCCTTCACTTCGTCTTTTAAAGCTTGTAATTCAGTGCTATTCTCGTTTGTCTAATAATCACAGCAGGGCTGGTATTGCACTAACAAGATGTCTTCCAAACATGCTCACAAATACCACTTTCATTAATTGCCTTCGTGAAGATCCAACAATTTGGAAGTGGTTAAACCAACTGTATGAAAATGTTGGGGTGAATGAGGTTCCTTTAGTACCAGGTAGAGAAGTAATCAATGATAGGGTTGAATCATCATTGTCAGGAAAATGA 975 0.3856 MENFSSRPLSMNKNVSSAVPFIASTQSNTTASRMAYMERLVRELNNSDLRENAIRVLSKRTDLFMELAPLLWNSFGTIAVLLQEIVSIYPNLSPPNLNSAQSTRVCNILALLQCVASHPDTKMLFIDANIPLYLYSFLKTRKELPQFENLRLASLGVIGALVKVNTKEVISFLLSSEVIPLCLSNMEIGKEMSKTIATFIIEKILADEDGLAYVCATVERFFAVSRVLDMMLENLQRQPSLRLLKLVIQCYSRLSNNHSRAGIALTRCLPNMLTNTTFINCLREDPTIWKWLNQLYENVGVNEVPLVPGREVINDRVESSLSGK 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06559 324 SUPERFAMILY ARM repeat 45 272 IPR016024 -
Vivi5g06559 324 Gene3D - 29 300 IPR011989 -
Vivi5g06559 324 PANTHER UNCHARACTERIZED 27 302 IPR007216 GO:0006402|GO:0030014
Vivi5g06559 324 FunFam Cell differentiation family, Rcd1-like containing protein 29 300 - -
Vivi5g06559 324 Pfam Cell differentiation family, Rcd1-like 40 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06559 Vivi-Chr5 172383571 172392349 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Rcd1-like Vivi5g06559 Rcd1 1.3e-105 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06559 K12606 - rcu:8278928 358.607