Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06558 ATGGAAAACTTTTCTTCTCGACCACTGTCAATGAACAAAAATGTGTCATCTGCGGTTCCCTTCATCGCTTCTACCCAATCTAACACCACCGCCTCTAGGATGGCGTACATGGAACGCCTTGTTCGTGAACTCAATAATTCTGATCTGCGAGAAAACGCTATTCGTGTCCTCTCCAAGAGGACTGACTTATTCATGGAACTTGCACCTTTATTGTGGAATTCTTTTGGTACCATTGCGGTACTTTTACAGGAAATAGTTTCAATATATCCTAATCTTTCACCACCAAATCTTAATTCTGCGCAATCAACTCGAGTGTGCAATATTCTTGCACTACTTCAGTGTGTGGCATCTCATCCTGATACAAAAATGCTGTTCATCGATGCTAATATACCATTGTATTTGTACTCCTTCCTTAAAACAAGAAAAGAGTTACCACAATTTGAGAATTTGAGGCTTGCTAGTCTTGGAGTCATTGGTGCCTTGGTGAAGGTTAACACCAAAGAAGTAATAAGTTTCCTTCTTTCAAGTGAGGTAATTCCATTGTGCTTGAGCAATATGGAAATCGGCAAAGAAATGTCAAAAACTATTGCAACATTTATAATTGAGAAAATTCTAGCAGATGAAGATGGTTTGGCTTATGTTTGTGCTACAGTAGAACGATTTTTTGCAGTAAGTCGAGTTTTGGACATGATGTTGGAAAATCTTCAGAGACAGCCTTCACTTCGTCTTTTAAAGCTTGTAATTCAGTGCTATTCTCGTTTGTCTAATAATCACAGGGCTGGTATTGCACTAACAAGATGTCTTCCAAACATGCTCACAAATACCACTTTCATTAATTGCCTTCGTGAAGATCCAACAATTTGGAAGTGGTTAAACCAACTGTATGAAAATGTTGGGGTGAATGAGGTTCCTTTAGTACCAGGTAGAGAAGTAATCAATGATAGGGTTGAATCATCATTGTCAGGAAAATGA 972 0.3848 MENFSSRPLSMNKNVSSAVPFIASTQSNTTASRMAYMERLVRELNNSDLRENAIRVLSKRTDLFMELAPLLWNSFGTIAVLLQEIVSIYPNLSPPNLNSAQSTRVCNILALLQCVASHPDTKMLFIDANIPLYLYSFLKTRKELPQFENLRLASLGVIGALVKVNTKEVISFLLSSEVIPLCLSNMEIGKEMSKTIATFIIEKILADEDGLAYVCATVERFFAVSRVLDMMLENLQRQPSLRLLKLVIQCYSRLSNNHRAGIALTRCLPNMLTNTTFINCLREDPTIWKWLNQLYENVGVNEVPLVPGREVINDRVESSLSGK 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06558 323 Pfam Cell differentiation family, Rcd1-like 40 298 - -
Vivi5g06558 323 Gene3D - 29 299 IPR011989 -
Vivi5g06558 323 FunFam Cell differentiation family, Rcd1-like containing protein 29 299 - -
Vivi5g06558 323 SUPERFAMILY ARM repeat 45 262 IPR016024 -
Vivi5g06558 323 PANTHER UNCHARACTERIZED 27 301 IPR007216 GO:0006402|GO:0030014
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06558 Vivi-Chr5 172383571 172392349 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Rcd1-like Vivi5g06558 Rcd1 3.4e-107 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06558 K12606 - rcu:8278928 362.844