Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06556 ATGGATTCCAAGCTCCGCCTCATGTGCAGCTACGGCGGCCACATCACGCCATTCGATAACTCACTCTTCTACATCGGCGGAGACACTCGCATAGTCTCCGTCGACCGTCACTCTTCCTTAACAAACATCTTTTCTCATCTCTCTCTGACTCTCCTTCACGGAAGAAAACCTTTCACTCTTAAATACCATCTTCCCAATGAAGACCTCGATAACCTTATCACTGTTTCCACCGACGAAGACCTCCAGAACATGATCGAAGAGTATGATCGTTTGTCTTTAAACCTTTCACCTTCACCTTCTCGACTCAGATTGTTCCTGTTTTTATCCAAACCAGAAACTGCTGTTTCGATGGGCAATTTTGATAACTCTGATGATCATGCGTGGTTTGTCGAAGCTCTCAACAACTCAGGTATTCTGTCGCGAGTGGTTTCTGATTCTGCCGCGCTGGTTGATAATTGCCTGCTCAACCTTGATGATGATGATGATCATGTTAGTGCTGCTTCAAGCAACGGCGGAGAAAATACTAATAGTACCAAGGAGCATTTGATTGATATGGATTATTCGATGCCTGTGGAAGACAAGAACAACGTTACTGTCAAACTTCCTCCAATAGAAGTTGATGATAATGATACCGCTATGTCGAATAATATAAAAAGTGAAGTATCTGATAAAAACGAGCAACATCAATTTGTCTATATTCAAGGTCAGGTTCCAATATCATCATACTACCCCGTTTATGCACCACAATCATACCAACAACTTCATCAATACCCAGTTTATGCAATGCCAATCGGACTTGGATCCATACAATCACAAAGCATATCCAATATAGCTGCTGATACGAAGGTGGCAATGGCAGTGGCACCAAATCCTGCTTTTGTGCAAATACATTCCGATCAATTTCAGCAGCGATATGTGAGTTTGCCTCAAAACCTAAATATTCATCAGACTATTTATGGTTATGAATACAATGGAGCTCAGAAAGAACAAATATACTACACACCACAACATCCTGCAGACGCAATTGCACCTCCACAGTACACCAATCCATGA 1053 0.4207 MDSKLRLMCSYGGHITPFDNSLFYIGGDTRIVSVDRHSSLTNIFSHLSLTLLHGRKPFTLKYHLPNEDLDNLITVSTDEDLQNMIEEYDRLSLNLSPSPSRLRLFLFLSKPETAVSMGNFDNSDDHAWFVEALNNSGILSRVVSDSAALVDNCLLNLDDDDDHVSAASSNGGENTNSTKEHLIDMDYSMPVEDKNNVTVKLPPIEVDDNDTAMSNNIKSEVSDKNEQHQFVYIQGQVPISSYYPVYAPQSYQQLHQYPVYAMPIGLGSIQSQSISNIAADTKVAMAVAPNPAFVQIHSDQFQQRYVSLPQNLNIHQTIYGYEYNGAQKEQIYYTPQHPADAIAPPQYTNP 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06556 350 SMART PB1_new 17 109 IPR000270 GO:0005515
Vivi5g06556 350 CDD PB1_UP2 8 107 - -
Vivi5g06556 350 SUPERFAMILY CAD & PB1 domains 19 118 - -
Vivi5g06556 350 PANTHER OS05G0427100 PROTEIN-RELATED 4 292 - -
Vivi5g06556 350 Pfam PB1 domain 19 107 IPR000270 GO:0005515
Vivi5g06556 350 Gene3D - 23 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06556 Vivi-Chr5 172364069 172365251 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06556 4 135 MAP Kinase Kinase Kinase AT3G46920 39.130 6.12e-20 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06556 - - psat:127105982 451.825