Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06514 ATGGACCCAACTTCCTTCGATCTCCCTCCACCACCACCCACCACCGTCCCCTTCTCCCTCGAACCCACCTTTGCACCCTCCTCCGTCACTCACCCTCCTTACGCCGAGATGATATACAAAGCAATAGAATCCCTCAAAGAGAAAGACGGTTCAAGCAAAAGAGCTATAGGAAAATTCATAGAACAAAACTACGGCAACGTTCTTCCAGAACAACACACCACTTTGTTAACTCAACATCTCAACCACTTGAAATCTGCTGGTCTTCTCATCACCGTTAAAAAATCTTACAAACTACCTTCCTCTCTCCCTCCACCTCCTACCGTCACTAGATCTGACTCCGAATCCCATCTCCCTTTCACTCCTTTAACCCAAAAAGCCCGCGGCCGTCCCCCTAAGCCCAAGCCCGAACTTTATTCCCAACCCGAACTTACTGCTCAGCCCGTTTTCGCATCTTTAGAATTTGAACCTCCTACTCAAGACGAGCCTGTGCCTCCTACTACAACTACAGTTGGCCTGACTCAAAGCCCGGCTGTAAGCCCGATTGTGAGCCCGACGACTCTATCTGCGAAAAGAGGACGCGGTCGTCCACCTGGGAGCTTCAGATCTAAGACGCTGAAGAGTGCTGGCCGTCCTCCTAAGCCCAAATCTGTGTCGAACGGGCTTAAACGACGTGGCCGTCCGCCGAAAGGTCAATCTCAGCCGACTGTTATTCCTTTTTCAGCTCCTGCTGCTGTTCCTTTTCCTTCTGTTGTCACAGATGGAGTTACAGTACCTGTTGTTAGATCTACCAGGCCAAGAGGCAGGCCTAAGAAGTATGCAGATGAGTTGATGTCAGTTGCTCCTACCATGAGGCAGGGTCGTCCTGCTAAGCTTGCTGTCATCGGTGGGCCTAAGAATCCCTTCCGAAGGCCCGTGGGCCGTCCAAAGGGAGCAAAAGGTGTGAAAAAGTTTGCTGATGAAGATCTAAGAAAGAAACTTGAGCACTTTCAATCAAAGGTGAAGGAATCTCTTGAAGTGCTTAAGCCTTATTTTGATCATCAAAGTCCAGTCAATGCAGTTGCAGCAATTCAAGAATTGGAAAACCTGGCAACACTGGACCTTAAAGCACCGTTAAGAGATGAAACACAGCAACAGCAACCAGAGCAGTTTCCGGAACAACCACCGCCGCAGCAACAGCTACCACCTCAGGAACAGGCTCCGCTGCAGCAACTGCCGTCGCAGGTGCAGATTTATGAACAGCAATATCTCCAGATTCCATTGCAGCAACAGATTCAGCAACTTTTTCAGCCACACAATTTAGCTTCAAGCTAG 1311 0.4943 MDPTSFDLPPPPPTTVPFSLEPTFAPSSVTHPPYAEMIYKAIESLKEKDGSSKRAIGKFIEQNYGNVLPEQHTTLLTQHLNHLKSAGLLITVKKSYKLPSSLPPPPTVTRSDSESHLPFTPLTQKARGRPPKPKPELYSQPELTAQPVFASLEFEPPTQDEPVPPTTTTVGLTQSPAVSPIVSPTTLSAKRGRGRPPGSFRSKTLKSAGRPPKPKSVSNGLKRRGRPPKGQSQPTVIPFSAPAAVPFPSVVTDGVTVPVVRSTRPRGRPKKYADELMSVAPTMRQGRPAKLAVIGGPKNPFRRPVGRPKGAKGVKKFADEDLRKKLEHFQSKVKESLEVLKPYFDHQSPVNAVAAIQELENLATLDLKAPLRDETQQQQPEQFPEQPPPQQQLPPQEQAPLQQLPSQVQIYEQQYLQIPLQQQIQQLFQPHNLASS 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06514 436 MobiDBLite consensus disorder prediction 281 314 - -
Vivi5g06514 436 PRINTS AT-hook-like domain signature 188 199 IPR017956 GO:0003677
Vivi5g06514 436 PRINTS AT-hook-like domain signature 124 134 IPR017956 GO:0003677
Vivi5g06514 436 PRINTS AT-hook-like domain signature 261 271 IPR017956 GO:0003677
Vivi5g06514 436 Gene3D - 27 111 IPR036388 -
Vivi5g06514 436 PANTHER HISTONE H1 16 254 - -
Vivi5g06514 436 SMART AT_hook_2 263 275 IPR017956 GO:0003677
Vivi5g06514 436 SMART AT_hook_2 221 233 IPR017956 GO:0003677
Vivi5g06514 436 SMART AT_hook_2 190 202 IPR017956 GO:0003677
Vivi5g06514 436 SMART AT_hook_2 302 314 IPR017956 GO:0003677
Vivi5g06514 436 SMART AT_hook_2 124 136 IPR017956 GO:0003677
Vivi5g06514 436 SUPERFAMILY "Winged helix" DNA-binding domain 28 105 IPR036390 -
Vivi5g06514 436 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 30 100 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vivi5g06514 436 FunFam Histone H1.2 27 108 - -
Vivi5g06514 436 CDD H15 28 95 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vivi5g06514 436 Pfam linker histone H1 and H5 family 31 93 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vivi5g06514 436 MobiDBLite consensus disorder prediction 367 404 - -
Vivi5g06514 436 MobiDBLite consensus disorder prediction 99 139 - -
Vivi5g06514 436 MobiDBLite consensus disorder prediction 164 186 - -
Vivi5g06514 436 SMART h15plus2 28 95 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vivi5g06514 436 MobiDBLite consensus disorder prediction 155 240 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06514 37 103 Single Myb Histone (SMH) Gene Family AT1G49950 40.299 6.26e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06514 - - vvo:131603969 687.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g06514 5 171945665 171948175 Vivi5g06514 5 171945665 171948175 ECH