LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi5g06513	ATGAAGAACATTCTTAAGAAGCTTCATATAATGTCTAATAATCAATCAGAAGATTCACAAGGTGAAAGGAGTAACAAGGTCAATGATGGTTCGTCTTCGTCGCCTACTACGCGAAAGAAGCTTTCGAATTGGTTGCAGTCAGTTTCTTCTAATAATAGGCAGAGTCCATGTAGTCCTCCATCTCCAAATTTGGCAAGAGGGGAGAGAGTGGAGCTATCGGATTCAGTGAGTTTTGGTGGTGGTTTGGATATGGTTTGTGAATCGGGGAAGCGTGATTCGGAGTCTAGCAGTTCAAGGGATCCTGAAGTGGAGGAGGAATATCAGATTCAGCTTGCTTTAGAACTGAGTGCAAAGGAGGATCCTGAGGCTGTGCAGATTGAAGCTGTTAAGCAGATCAGTTTGGGATCTTGTGACCCTGATAATACACCAGCCGAAGTTGTCGCCTACCGATACTGGAATTACAATGCTCTTGGTTATGATGACAAGATCTCAGATGGTTTCTATGATCTATACGGTGTCTTAACCGACTCAACCTCGACAAGAATGCCTTCTCTTATAGATCTGCAAGGAACCCCAACCGGAAATGATGTAAAATGGGAAGCAGTCTTGGTCAATAGGGTTGCTGATTCCAATTTGTTGAAACTTGAGCAAAAGGCCATGGAGCTTGCAGTGATAAAGTCAAGAGAAGATTTTGAAATAGTTATAGATAGAAATCTGGTGCACAAGCTTGCAATACTAGTGGCTGAATATATGGGTGGATCAGTTGAAGATCCTGAAAGCATGTTAAGAGCATGGAGGAGTCTTAGTTTCAGTCTAAAAGCAACCCTCGGTAGCATGGTTTTGCCTCTTGGTTCGCTGACCATGGGACTGGCTCGGCATCGTGCATTGCTATTTAAGGTATTAGCCGATAGTTTGGGTATCCCTTGTCGGTTGGTGAAAGGAATGCAATATACAGGTTCCGACGATGTGGCAATGAACTTTGTCAAGATTGATGAAGGAAGGGAGTACATTGTTGACCTCATGGCAGCTCCTGGAACTCTTATTCCATCCGATGCAGCTGGTTCGCATATTGAGTACGATGATTCTTCTTTCGTTGCCAGTCCTTCATCAAGAGATCATGATTCGTCTCGGATTGCATCGTTCAGCAGCGGTGTTGGAAGTTCGTCCGGAGAAACTTCGGAGTTTGGGACTTTTGAAAAAGGAAACAGGTACAAGCATTTTGCCTATGCAGGGAAGGAATCTGATACTGGCAAGGATGAAGTAAAGAAACCGTTAAATGAATTCAAAAATATGCCGAACGTAGAAAAGATCAAGGCGAGGGAATCTGTTAGCAGACCTAATAATTATCCGTACACGCACGGAAGATCTCCTTCTTGGACAGAAGGGATCAGTTCCCCTGCAGCACATAGAATGAAAGTCAAAGATGTTTCTCAATATATGATCGACGCTGCAAAAGAGAACCCTAACTTGGCTCAAAAGCTTCACGATGTTTTACTTGAAAGCGGTGTTGTTGCTCCTCCTAACTTGTTTTCTGAAATTTATCATGACCAGATAGGTTCTCAAAATGAGGCCAATCAAAACGAGGACAATTCTCCAACTGAAGAAGTAGATGAATATAAATATGGAAGTGCACAGAAAGAAGCCAAGGTTGGCGATAATCAAGCTACTCCTCGATTTTTGCCTCCATTGCCTCCACACAGAACTCATCCCAAAGCAAGTCCTAGCCATCTGACGGAGCATTCTAAGCCTGTAGAAGGTTTAGGAATCGGCCATTCTCTTGATACAAGGGAATCTGCTGGACAGCAGATACAATCCGATACAGAAGCAGCACAAGTAAAGTATGGGAAAAATGTCCCGGTTGCTGCTGCTGCAGCGGCTGCGGCTGCTGTTGTCGCTTCGTCTATGGTAGCTGCCGTGGCAAAGTCAAGCACAGATTCAAATTTTGAAATTCCTGTAGCGGCAGCTGCTACTGCCACTGCTGCGGCTGTTGTAGCAACCACTGCTGCTGTCAATAATGTCAATAAACAGTATGAGCAGGGGAATCGAAGTGATGGAGAGACAGGTAGTGGTGATGGAGAGAATAATGCTTTAGGAGTAAACTCAGAAGGCGAGCGAAAATCTGATAGATCAGTAAGTAATGATAGCTCAAAATCTGATTCTGCACTAGAAGATGTTGCTGAGTATGATATTCCATGGGAGGAAATCTCGATGGGTGAGCGTATCGGACTTGGATCGTATGGAGAAGTGTATCGTGGTGAATGGCATGGAACTGAAGTTGCTGTAAAGAGGTTTCTACTTCAAGATATCTCTGGGGAATCACTTGAAGAATTCAAAAGTGAGGTCCAAATTATGAGAAGATTGAGGCATCCAAATGTTGTTCTCTTCATGGGAGCTATAACTCGGCCTCCAAATCTTTCAATTGTTACTGAATTTCTTCCGAGAGGGAGTTTGTATAGATTACTTCACCGACCTAACAGTCAATTAGACGAGCGAAGGCGATTGAGGATGGCCCTGGACGCTGCTCGAGGAATGAACTATTTGCACAACAGCACACCAGTGATAGTGCATCGGGATTTGAAATCCCCAAACCTTCTTGTCGACAAAAACTGGGTTGTAAAGGTATGTGATTTCGGCTTATCCCGAATGAAGTACAGTACATTCCTTTCTTCAAGATCAACGGCGGGAACAGTAAGCTATCGCCGAGTGGATGGCTCCAGAAGTATTGAGAAATGA	2733	0.4394	MKNILKKLHIMSNNQSEDSQGERSNKVNDGSSSSPTTRKKLSNWLQSVSSNNRQSPCSPPSPNLARGERVELSDSVSFGGGLDMVCESGKRDSESSSSRDPEVEEEYQIQLALELSAKEDPEAVQIEAVKQISLGSCDPDNTPAEVVAYRYWNYNALGYDDKISDGFYDLYGVLTDSTSTRMPSLIDLQGTPTGNDVKWEAVLVNRVADSNLLKLEQKAMELAVIKSREDFEIVIDRNLVHKLAILVAEYMGGSVEDPESMLRAWRSLSFSLKATLGSMVLPLGSLTMGLARHRALLFKVLADSLGIPCRLVKGMQYTGSDDVAMNFVKIDEGREYIVDLMAAPGTLIPSDAAGSHIEYDDSSFVASPSSRDHDSSRIASFSSGVGSSSGETSEFGTFEKGNRYKHFAYAGKESDTGKDEVKKPLNEFKNMPNVEKIKARESVSRPNNYPYTHGRSPSWTEGISSPAAHRMKVKDVSQYMIDAAKENPNLAQKLHDVLLESGVVAPPNLFSEIYHDQIGSQNEANQNEDNSPTEEVDEYKYGSAQKEAKVGDNQATPRFLPPLPPHRTHPKASPSHLTEHSKPVEGLGIGHSLDTRESAGQQIQSDTEAAQVKYGKNVPVAAAAAAAAAVVASSMVAAVAKSSTDSNFEIPVAAAATATAAAVVATTAAVNNVNKQYEQGNRSDGETGSGDGENNALGVNSEGERKSDRSVSNDSSKSDSALEDVAEYDIPWEEISMGERIGLGSYGEVYRGEWHGTEVAVKRFLLQDISGESLEEFKSEVQIMRRLRHPNVVLFMGAITRPPNLSIVTEFLPRGSLYRLLHRPNSQLDERRRLRMALDAARGMNYLHNSTPVIVHRDLKSPNLLVDKNWVVKVCDFGLSRMKYSTFLSSRSTAGTVSYRRVDGSRSIEK	910

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi5g06513	910	MobiDBLite	consensus disorder prediction	676	696	-	-
	Vivi5g06513	910	MobiDBLite	consensus disorder prediction	87	104	-	-
	Vivi5g06513	910	MobiDBLite	consensus disorder prediction	364	395	-	-
	Vivi5g06513	910	PANTHER	SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED	177	899	-	-
	Vivi5g06513	910	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	854	866	IPR008271	GO:0004672\|GO:0006468
	Vivi5g06513	910	ProSiteProfiles	Protein kinase domain profile.	735	910	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi5g06513	910	Pfam	Ethylene-responsive protein kinase Le-CTR1	144	348	-	-
	Vivi5g06513	910	FunFam	Serine/threonine-protein kinase isoform 1	726	813	-	-
	Vivi5g06513	910	MobiDBLite	consensus disorder prediction	1	104	-	-
	Vivi5g06513	910	Pfam	Protein tyrosine and serine/threonine kinase	736	886	IPR001245	GO:0004672\|GO:0006468
	Vivi5g06513	910	MobiDBLite	consensus disorder prediction	8	61	-	-
	Vivi5g06513	910	Gene3D	Transferase(Phosphotransferase) domain 1	814	903	-	-
	Vivi5g06513	910	CDD	STKc_MAP3K-like	741	899	-	-
	Vivi5g06513	910	SMART	serkin_6	735	908	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi5g06513	910	MobiDBLite	consensus disorder prediction	545	604	-	-
	Vivi5g06513	910	ProSitePatterns	Protein kinases ATP-binding region signature.	741	762	IPR017441	GO:0005524
	Vivi5g06513	910	SUPERFAMILY	Protein kinase-like (PK-like)	723	900	IPR011009	-
	Vivi5g06513	910	Gene3D	Phosphorylase Kinase; domain 1	728	812	-	-
	Vivi5g06513	910	MobiDBLite	consensus disorder prediction	676	722	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi5g06513	Vivi-Chr5	171906385	171912248	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi5g06513	1	899	MAP Kinase Kinase Kinase	AT1G73660	58.207	0.0	917

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL_CTR1-DRK-2	Vivi5g06513		EDR1	4.1e-75	CL0125

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi5g06513	-		-	gmx:100778331	1290.4