Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06512 ATGCCTTCTCTTATAGATCTGCAAGGAACCCCAACCGGAAATGATGTAAAATGGGAAGCAGTCTTGGTCAATAGGGTTGCTGATTCCAATTTGTTGAAACTTGAGCAAAAGGCCATGGAGCTTGCAGTGATAAAGTCAAGAGAAGATTTTGAAATAGTTATAGATAGAAATCTGGTGCACAAGCTTGCAATACTAGTGGCTGAATATATGGGTGGATCAGTTGAAGATCCTGAAAGCATGTTAAGAGCATGGAGGAGTCTTAGTTTCAGTCTAAAAGCAACCCTCGGTAGCATGGTTTTGCCTCTTGGTTCGCTGACCATGGGACTGGCTCGGCATCGTGCATTGCTATTTAAGGTATTAGCCGATAGTTTGGGTATCCCTTGTCGGTTGGTGAAAGGAATGCAATATACAGGTTCCGACGATGTGGCAATGAACTTTGTCAAGATTGATGAAGGAAGGGAGTACATTGTTGACCTCATGGCAGCTCCTGGAACTCTTATTCCATCCGATGCAGCTGGTTCGCATATTGAGTACGATGATTCTTCTTTCGTTGCCAGTCCTTCATCAAGAGATCATGATTCGTCTCGGATTGCATCGTTCAGCAGCGGTGTTGGAAGTTCGTCCGGAGAAACTTCGGAGTTTGGGACTTTTGAAAAAGGAAACAGGTACAAGCATTTTGCCTATGCAGGGAAGGAATCTGATACTGGCAAGGATGAAGTAAAGAAACCGTTAAATGAATTCAAAAATATGCCGAACGTAGAAAAGATCAAGGCGAGGGAATCTGTTAGCAGACCTAATAATTATCCGTACACGCACGGAAGATCTCCTTCTTGGACAGAAGGGATCAGTTCCCCTGCAGCACATAGAATGAAAGTCAAAGATGTTTCTCAATATATGATCGACGCTGCAAAAGAGAACCCTAACTTGGCTCAAAAGCTTCACGATGTTTTACTTGAAAGCGGTGTTGTTGCTCCTCCTAACTTGTTTTCTGAAATTTATCATGACCAGATAGGTTCTCAAAATGAGGCCAATCAAAACGAGGACAATTCTCCAACTGAAGAAGTAGATGAATATAAATATGGAAGTGCACAGAAAGAAGCCAAGGTTGGCGATAATCAAGCTACTCCTCGATTTTTGCCTCCATTGCCTCCACACAGAACTCATCCCAAAGCAAGTCCTAGCCATCTGACGGAGCATTCTAAGCCTGTAGAAGGTTTAGGAATCGGCCATTCTCTTGATACAAGGGAATCTGCTGGACAGCAGATACAATCCGATACAGAAGCAGCACAAGTAAAGTATGGGAAAAATGTCCCGGTTGCTGCTGCTGCAGCGGCTGCGGCTGCTGTTGTCGCTTCGTCTATGGTAGCTGCCGTGGCAAAGTCAAGCACAGATTCAAATTTTGAAATTCCTGTAGCGGCAGCTGCTACTGCCACTGCTGCGGCTGTTGTAGCAACCACTGCTGCTGTCAATAATGTCAATAAACAGTATGAGCAGGGGAATCGAAGTGATGGAGAGACAGGTAGTGGTGATGGAGAGAATAATGCTTTAGGAGTAAACTCAGAAGGCGAGCGAAAATCTGATAGATCAGTAAGTAATGATAGCTCAAAATCTGATTCTGCACTAGAAGATGTTGCTGAGTATGATATTCCATGGGAGGAAATCTCGATGGGTGAGCGTATCGGACTTGGATCGTATGGAGAAGTGTATCGTGGTGAATGGCATGGAACTGAAGTTGCTGTAAAGAGGTTTCTACTTCAAGATATCTCTGGGGAATCACTTGAAGAATTCAAAAGTGAGGTCCAAATTATGAGAAGATTGAGGCATCCAAATGTTGTTCTCTTCATGGGAGCTATAACTCGGCCTCCAAATCTTTCAATTGTTACTGAATTTCTTCCGAGAGGGAGTTTGTATAGATTACTTCACCGACCTAACAGTCAATTAGACGAGCGAAGGCGATTGAGGATGGCCCTGGACGCTGCTCGAGGAATGAACTATTTGCACAACAGCACACCAGTGATAGTGCATCGGGATTTGAAATCCCCAAACCTTCTTGTCGACAAAAACTGGGTTGTAAAGGTATGTGATTTCGGCTTATCCCGAATGAAGTACAGTACATTCCTTTCTTCAAGATCAACGGCGGGAACAGCCGAGTGGATGGCTCCAGAAGTATTGAGAAATGAACTTTCAGATGAAAAGTGTGATGTTTTTAGCTACGGAGTCATATTATGGGAGCTCTGTACTTTGCAGCAACCCTGGGGAGGAATGAATCCAATGCAAGTTGTTGGTGCTGTTGGTTTCCAGCATCGTCGTCTCGACATTCCAGACAATGTGGACCCTGCTGTTGCAAGTATTATTAGACAGTGTTGGCAGACAGATCCAAAATTGAGACCTACGTTTGCTGAAATCATGGCGTTGCTGAAGCCGTTGCAAAAGCCAATTACTGCTTCTCAAGTGCATAGAGCAAATGCTCCGACACCATCATCGCGAGTTCCTGAAGATCCTGAAGCATAA 2511 0.4421 MPSLIDLQGTPTGNDVKWEAVLVNRVADSNLLKLEQKAMELAVIKSREDFEIVIDRNLVHKLAILVAEYMGGSVEDPESMLRAWRSLSFSLKATLGSMVLPLGSLTMGLARHRALLFKVLADSLGIPCRLVKGMQYTGSDDVAMNFVKIDEGREYIVDLMAAPGTLIPSDAAGSHIEYDDSSFVASPSSRDHDSSRIASFSSGVGSSSGETSEFGTFEKGNRYKHFAYAGKESDTGKDEVKKPLNEFKNMPNVEKIKARESVSRPNNYPYTHGRSPSWTEGISSPAAHRMKVKDVSQYMIDAAKENPNLAQKLHDVLLESGVVAPPNLFSEIYHDQIGSQNEANQNEDNSPTEEVDEYKYGSAQKEAKVGDNQATPRFLPPLPPHRTHPKASPSHLTEHSKPVEGLGIGHSLDTRESAGQQIQSDTEAAQVKYGKNVPVAAAAAAAAAVVASSMVAAVAKSSTDSNFEIPVAAAATATAAAVVATTAAVNNVNKQYEQGNRSDGETGSGDGENNALGVNSEGERKSDRSVSNDSSKSDSALEDVAEYDIPWEEISMGERIGLGSYGEVYRGEWHGTEVAVKRFLLQDISGESLEEFKSEVQIMRRLRHPNVVLFMGAITRPPNLSIVTEFLPRGSLYRLLHRPNSQLDERRRLRMALDAARGMNYLHNSTPVIVHRDLKSPNLLVDKNWVVKVCDFGLSRMKYSTFLSSRSTAGTAEWMAPEVLRNELSDEKCDVFSYGVILWELCTLQQPWGGMNPMQVVGAVGFQHRRLDIPDNVDPAVASIIRQCWQTDPKLRPTFAEIMALLKPLQKPITASQVHRANAPTPSSRVPEDPEA 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06512 836 FunFam Serine/threonine-protein kinase CTR1 633 816 - -
Vivi5g06512 836 Pfam Ethylene-responsive protein kinase Le-CTR1 1 167 - -
Vivi5g06512 836 CDD STKc_MAP3K-like 560 806 - -
Vivi5g06512 836 MobiDBLite consensus disorder prediction 495 541 - -
Vivi5g06512 836 SUPERFAMILY Protein kinase-like (PK-like) 538 805 IPR011009 -
Vivi5g06512 836 Gene3D Phosphorylase Kinase; domain 1 547 631 - -
Vivi5g06512 836 ProSiteProfiles Protein kinase domain profile. 554 810 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g06512 836 MobiDBLite consensus disorder prediction 364 423 - -
Vivi5g06512 836 MobiDBLite consensus disorder prediction 816 836 - -
Vivi5g06512 836 Gene3D Transferase(Phosphotransferase) domain 1 633 818 - -
Vivi5g06512 836 SMART serkin_6 554 809 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g06512 836 ProSitePatterns Protein kinases ATP-binding region signature. 560 581 IPR017441 GO:0005524
Vivi5g06512 836 PRINTS Tyrosine kinase catalytic domain signature 714 724 IPR001245 GO:0004672|GO:0006468
Vivi5g06512 836 PRINTS Tyrosine kinase catalytic domain signature 777 799 IPR001245 GO:0004672|GO:0006468
Vivi5g06512 836 PRINTS Tyrosine kinase catalytic domain signature 667 685 IPR001245 GO:0004672|GO:0006468
Vivi5g06512 836 PRINTS Tyrosine kinase catalytic domain signature 733 755 IPR001245 GO:0004672|GO:0006468
Vivi5g06512 836 PRINTS Tyrosine kinase catalytic domain signature 628 641 IPR001245 GO:0004672|GO:0006468
Vivi5g06512 836 Pfam Protein tyrosine and serine/threonine kinase 555 805 IPR001245 GO:0004672|GO:0006468
Vivi5g06512 836 MobiDBLite consensus disorder prediction 183 214 - -
Vivi5g06512 836 ProSitePatterns Serine/Threonine protein kinases active-site signature. 673 685 IPR008271 GO:0004672|GO:0006468
Vivi5g06512 836 MobiDBLite consensus disorder prediction 495 515 - -
Vivi5g06512 836 FunFam Serine/threonine-protein kinase isoform 1 545 632 - -
Vivi5g06512 836 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 299 815 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06512 Vivi-Chr5 171905636 171911019 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06512 1 828 MAP Kinase Kinase Kinase AT1G73660 63.158 0.0 944
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Vivi5g06512 PK_Tyr_Ser-Thr 7.7e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06512 - - gmx:100778331 1242.64