Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06498 ATGTGGATGGTAGGTTACAATGAAGGTAGTGACTTCAACATGGCTGATTATCCTTTCAATGGAAGAAAACTCAGACCTCTCATTCCAAAGCCACTCACTACTACTTCCTCTTCTACTTCTTCTCCTAACAACAACATTTCAACTACTAATCCTTCCTTAAACCGCATTCATGGCACCAATGATTTCTTCACACAATATCACAACCTTCACCAAGTTGGAGATCAAAGCAAGAGATCAGAGTTGAACAATCCGGCCGCAGTTGTGGTGAGTTCGAGATGGAATCCAACGCCGGAACAGTTAAGAGCACTTGAAGAATTATATAGAAGAGGAACAAGAACACCATCTGCTGAACAAATCCAACAAATCACTGCACAGCTAAGAAGATTCGGAAAAATTGAAGGAAAGAATGTCTTCTATTGGTTTCAGAATCACAAAGCAAGAGAAAGACAGAAACGACGCCGTCAAATGGAATCAGCAGCTGAGTTTGATGCTTCTCTTGAAAAGAAAGACCTAGGAGCAAGTAGGACAGTGTTTGAAGTTGAACACACCAAAAACTGGCTACCATCCACAAACTCCAGTACCAGTACTCTTCCTCTTGCAGAGGAATCTGCTTCAATTCAAAGGGTAGCAGCAAAAGCAGATCAGTACTCTAGAACAGATGGATGGGTCCAATTCGATGAAGCAGAAAGAAAAAATTTTATGGAAAGGAATGCCACGTGGCATATGATGCAGTTAACTTGTCCTACCTTCATAAACACTACACAATGTTACCCTAATAATTCTAATTACATCCCTTCTACAGCAACAGCTAGCATGGCCACCACCACCTCAACTACAGTAACAACTAGACTAATGGACCCAAAACTCATCAAGAGGACACATGATTTAAGCTTATTCATTTCACCTTTCCACTTAACCAGTAATAGTAGTAGAATCAACACTAGTACTCACACTCAGCATGAAGAATCTGATCAAACACTTCAACTTTTCCCAATAAGGAATGAAGGAGATAATGGAGGCAGTGATGATGTTGATCATAGCATTATTAACCAACACAAAGAGACAGAGATATCATCTTCAGCAATGAATGCACCAAACCAGTTTATTGAGTTTCTACCGTTGAAGAACTGA 1131 0.4014 MWMVGYNEGSDFNMADYPFNGRKLRPLIPKPLTTTSSSTSSPNNNISTTNPSLNRIHGTNDFFTQYHNLHQVGDQSKRSELNNPAAVVVSSRWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRRFGKIEGKNVFYWFQNHKARERQKRRRQMESAAEFDASLEKKDLGASRTVFEVEHTKNWLPSTNSSTSTLPLAEESASIQRVAAKADQYSRTDGWVQFDEAERKNFMERNATWHMMQLTCPTFINTTQCYPNNSNYIPSTATASMATTTSTTVTTRLMDPKLIKRTHDLSLFISPFHLTSNSSRINTSTHTQHEESDQTLQLFPIRNEGDNGGSDDVDHSIINQHKETEISSSAMNAPNQFIEFLPLKN 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06498 376 Gene3D - 89 151 - -
Vivi5g06498 376 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 74 370 IPR044555 GO:0003700|GO:0099402
Vivi5g06498 376 SMART HOX_1 88 155 IPR001356 GO:0003677
Vivi5g06498 376 MobiDBLite consensus disorder prediction 28 55 - -
Vivi5g06498 376 SUPERFAMILY Homeodomain-like 91 157 IPR009057 -
Vivi5g06498 376 Pfam Homeodomain 91 150 IPR001356 GO:0003677
Vivi5g06498 376 ProSiteProfiles 'Homeobox' domain profile. 96 151 IPR001356 GO:0003677
Vivi5g06498 376 MobiDBLite consensus disorder prediction 30 55 - -
Vivi5g06498 376 CDD homeodomain 92 152 IPR001356 GO:0003677
Vivi5g06498 376 FunFam WUSCHEL-related homeobox 4 90 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06498 Vivi-Chr5 171688932 171691577 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06498 1 376 Wox Gene Family AT3G18010 37.317 1.61e-61 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vivi5g06498 Homeodomain 1e-19 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g06498 5 171688932 171691577 Vivi5g06498 5 171688932 171691577 ECH