Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06494 ATGGTAAAATCACCCCAATATGATAGATTTTCGAAGGATTTTGCAATGGGAGGCGCAGCGGCAATCGTATCGAAGAGTGCAGTAGCACCGATTGAGAGAGTGAAGCTTTTACTACAAAATCAAAGTGAAATGATCAAAAGAGGACAGCTCAAAAGACCATACCTCGGCGTGACTAATGGCTTTAAGAGAGTCTTCGCGGAAGAGGGTCTGGTTGCCTTCTGGAGAGGCAACCAGGCCAATGTTATAAGATATTTTCCCACACAGGCTTTCAATTTTGCATTCAAAGGATACTTCAAAAGCATCTTTGGATATTCCAAAGAGAAAGACGGGTACGTTAAGTGGTTTGCTGGGAATGTTGCTTCAGGCAGTGCTGCAGGAGCCACTACTTCAATGCTTTTGTATCATTTGGACTTTGCACGTACAAGATTGGCCACCGATGCTGTCGTGTGCCATGTTACTGGTCAGCGTCAGTTTAAAGGACTAATTGATGTGTATCGGAAGACTTTATCAAGTGATGGAATAGCTGGCTTGTACAGAGGATTTGGGGTTTCGATATTGGGAATCACCATGTATCGAGGGATGTACTTTGGGATCTATGACACCATGAAGCCTGTTGTTTTAGTTGGGGCTCTTGAGGGGAACTTCTTTGCTAGTTTCTTGTTAGGTTGGAGCATCACAACTGTATCTGGCGTCTGTGCATACCCTTTTGACACACTGCGGCGGCGTATGATGCTAACCTCCGGACACCATATCAAGTATAATAATGCAATGCATGCATTCCGTGAGATTGTTGCACAAGAGGGTTTCTTAGCCCTATTTCGAGGAGTTACCGCAAATATGCTTCTTGGAATGGCTGGAGCTGGGGTGCTTGCTGGGTACGATCAGCTAAATCGTATCTCATCTAGACACAACATCAATAATGAAGCAAACCAAAGAGTTCTGAAATAA 948 0.442 MVKSPQYDRFSKDFAMGGAAAIVSKSAVAPIERVKLLLQNQSEMIKRGQLKRPYLGVTNGFKRVFAEEGLVAFWRGNQANVIRYFPTQAFNFAFKGYFKSIFGYSKEKDGYVKWFAGNVASGSAAGATTSMLLYHLDFARTRLATDAVVCHVTGQRQFKGLIDVYRKTLSSDGIAGLYRGFGVSILGITMYRGMYFGIYDTMKPVVLVGALEGNFFASFLLGWSITTVSGVCAYPFDTLRRRMMLTSGHHIKYNNAMHAFREIVAQEGFLALFRGVTANMLLGMAGAGVLAGYDQLNRISSRHNINNEANQRVLK 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06494 315 PRINTS Mitochondrial carrier protein signature 178 196 IPR002067 GO:0055085
Vivi5g06494 315 PRINTS Mitochondrial carrier protein signature 26 40 IPR002067 GO:0055085
Vivi5g06494 315 PRINTS Mitochondrial carrier protein signature 128 146 IPR002067 GO:0055085
Vivi5g06494 315 PRINTS Mitochondrial carrier protein signature 13 26 IPR002067 GO:0055085
Vivi5g06494 315 PRINTS Mitochondrial carrier protein signature 222 244 IPR002067 GO:0055085
Vivi5g06494 315 PRINTS Mitochondrial carrier protein signature 76 96 IPR002067 GO:0055085
Vivi5g06494 315 PANTHER ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 9 305 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vivi5g06494 315 FunFam ADP,ATP carrier protein ER-ANT1 11 305 - -
Vivi5g06494 315 Gene3D Mitochondrial carrier domain 11 305 IPR023395 -
Vivi5g06494 315 ProSiteProfiles Solute carrier (Solcar) repeat profile. 213 299 IPR018108 -
Vivi5g06494 315 ProSiteProfiles Solute carrier (Solcar) repeat profile. 113 205 IPR018108 -
Vivi5g06494 315 ProSiteProfiles Solute carrier (Solcar) repeat profile. 8 101 IPR018108 -
Vivi5g06494 315 PRINTS Adenine nucleotide translocator signature 87 99 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vivi5g06494 315 PRINTS Adenine nucleotide translocator signature 218 234 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vivi5g06494 315 PRINTS Adenine nucleotide translocator signature 10 22 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vivi5g06494 315 PRINTS Adenine nucleotide translocator signature 54 75 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vivi5g06494 315 PRINTS Adenine nucleotide translocator signature 113 126 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vivi5g06494 315 Pfam Mitochondrial carrier protein 214 300 IPR018108 -
Vivi5g06494 315 Pfam Mitochondrial carrier protein 9 103 IPR018108 -
Vivi5g06494 315 Pfam Mitochondrial carrier protein 114 205 IPR018108 -
Vivi5g06494 315 SUPERFAMILY Mitochondrial carrier 8 296 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06494 Vivi-Chr5 171643453 171645973 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06494 8 303 Antiporters AT5G17400 78.041 1.09e-168 469
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06494 K05863 - gmx:100798418 531.561