Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06491 ATGGCGGCGATTCAAAACGAACCGGCGAAGCTACGTTGGGGAGAATTGGAAGAAGACGACGGCGAAGATCTCGCTTTTCTGTTACCTCCACCTCAGACCATAGGTCCCGACGAAAACGGAATCAAGAGGGTTATCGCGTACCAGTTTGATGATGATGGTAACAAGGTTAAGATCACAACAACCACTCGTACCCGCAAACTCGCCAACGCGCGCCTCAGCAAACGCGCCGTCGAACGCCGTTCGTGGCCGAAGTTTGGAGATGCTGTTCAGGAAGACGTTGGTGCTCGCCTCACTATGGTCTCCACCGAAGAGATCGTCCTAGAACGCCCCAAACCTCTTGGTTCCAGCAAGGAGGATGCAAAGACTAGTGACCCATTGGCTCAGTTCAATAAAGGTGCTGTTCTCATGGTATGCAGGACTTGTGGGAAGAAGGGTGACCATTGGACTTCAAGGTGTCCATATAAGGATCTCGCACAGCCGTCTGAGGGCTTTGTTGATAAACCTCCAACCGCAGATGGTGCTGCGGCTCCTGCTGGTTCGACTAAGGGTGCATATGTACCTCCTAGCCTGAGAGCTGGTGCGGAGAGGACTACTGGGTCAGACATGAGGCGGAGGAACGATGAGAATTCTGTTCGGGTAACCAACCTCTCGGAGGACACAAGGGAGCCTGATTTGCTTGAGCTTTTCCGGCCTTTTGGTGCTGTGAGCAGGGTCTATGTTGCTATAGACCAAAAGACTGGCATGAGTAGGGGATTTGGCTTTGTTAACTTTGTCAGCAGGGAAGATGCTCAAAGGGCTATTAACAAACTCAATGGATATGGCTACGACAATCTCATTCTGAGAGTTGAATGGGCCACCCCTAGAACAACCTAA 873 0.5143 MAAIQNEPAKLRWGELEEDDGEDLAFLLPPPQTIGPDENGIKRVIAYQFDDDGNKVKITTTTRTRKLANARLSKRAVERRSWPKFGDAVQEDVGARLTMVSTEEIVLERPKPLGSSKEDAKTSDPLAQFNKGAVLMVCRTCGKKGDHWTSRCPYKDLAQPSEGFVDKPPTADGAAAPAGSTKGAYVPPSLRAGAERTTGSDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAIDQKTGMSRGFGFVNFVSREDAQRAINKLNGYGYDNLILRVEWATPRTT 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06491 290 SUPERFAMILY RNA-binding domain, RBD 198 289 IPR035979 GO:0003676
Vivi5g06491 290 CDD RRM_eIF3G_like 210 285 IPR034240 -
Vivi5g06491 290 FunFam Eukaryotic translation initiation factor 3 subunit G 173 290 - -
Vivi5g06491 290 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 209 287 IPR000504 GO:0003723
Vivi5g06491 290 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 277 IPR000504 GO:0003723
Vivi5g06491 290 Hamap Eukaryotic translation initiation factor 3 subunit G [EIF3G]. 10 289 IPR017334 GO:0003743|GO:0005737|GO:0005852
Vivi5g06491 290 Gene3D - 171 290 IPR012677 -
Vivi5g06491 290 MobiDBLite consensus disorder prediction 163 209 - -
Vivi5g06491 290 PIRSF Transl_init_eIF-3_RNA-bind 2 290 IPR017334 GO:0003743|GO:0005737|GO:0005852
Vivi5g06491 290 Pfam Eukaryotic translation initiation factor 3 subunit G 32 157 IPR024675 -
Vivi5g06491 290 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 20 286 - -
Vivi5g06491 290 SMART rrm1_1 210 283 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06491 Vivi-Chr5 171608507 171610414 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06491 5 290 Eukaryotic Initiation Factors Gene Family AT3G11400 66.667 1.53e-149 420
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06491 K03248 - gmx:100818725 503.442