Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06490 ATGACGATTCAAAACAAACCGTCGAAGCCTCGGTGGGGAGAATTGGAAGAAGATGACGTCGAAGATCTCGCTTTTCTGTTACCTAAACCTAAGACCATAGGTCCTGACGAAAACGGAATCAAGAAGGTTATTGAGTACCACTTCGATAAGGATGAAAATACGGTTAAGATCACAACAACCACTCGTATTCGCAAACTCGCCAACGCGCGTCTCAGCAAACGCGCCGTCGAACGCCGTTCGTGGCCGAAGTTTGGAGATGCTGTTCAAGAAGACGTTGGTGCTCGCCTAACTATGGTCTCCACTGAAGAGATCGTCCTAGAACGCCCCAAACCTCTTGGTTCCAGCAAGGAGGATGCAAAGACTAGTGACCCATTGGCTCAGTTCAATAAAGGTGCTGTTCTCATGGTATGCAGGACTTGTGGGAAGAAGGGTGACCATTGGACTTCAAGGTGTCCGTATAAGGATCTCGCACAGCCGTCTGAGGGCTTTACTGATAAACCTCCAACCGCAGATGGTGCTGCGGCGCCTGCTGGTTTGACTAAGGGTGCATATGTACCTCCTAGCCTGAGAGCTAATGTGGAGAGGACTATTGGGTCAGACATGAGACGGAGGAACGATGAGAATTCTGTTCGAGTGACCAACCTTTCAGAGGACACAAGGGAGCCTGATTTGCTTGAGCTTTTCCGGCCTTTTGGTGCTGTGACCAGGGTCTATGTTGCTATAGACCAAAAGACTGGCATGAGTAGGGGCTTTGGCTTTGTTAACTTTGTCAGCAGGGAAGATGCTCAAAGGGCTATTAACAAACTCAATGGATATGGCTATGACAATCTCATTCTGAGAGTTGAATGGGCCACCCCTAGAACAACCTAA 870 0.4874 MTIQNKPSKPRWGELEEDDVEDLAFLLPKPKTIGPDENGIKKVIEYHFDKDENTVKITTTTRIRKLANARLSKRAVERRSWPKFGDAVQEDVGARLTMVSTEEIVLERPKPLGSSKEDAKTSDPLAQFNKGAVLMVCRTCGKKGDHWTSRCPYKDLAQPSEGFTDKPPTADGAAAPAGLTKGAYVPPSLRANVERTIGSDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVTRVYVAIDQKTGMSRGFGFVNFVSREDAQRAINKLNGYGYDNLILRVEWATPRTT 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06490 289 CDD eIF3G 38 155 IPR024675 -
Vivi5g06490 289 MobiDBLite consensus disorder prediction 159 181 - -
Vivi5g06490 289 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 210 276 IPR000504 GO:0003723
Vivi5g06490 289 Hamap Eukaryotic translation initiation factor 3 subunit G [EIF3G]. 9 288 IPR017334 GO:0003743|GO:0005737|GO:0005852
Vivi5g06490 289 SUPERFAMILY RNA-binding domain, RBD 192 288 IPR035979 GO:0003676
Vivi5g06490 289 CDD RRM_eIF3G_like 209 284 IPR034240 -
Vivi5g06490 289 SMART rrm1_1 209 282 IPR000504 GO:0003723
Vivi5g06490 289 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 286 IPR000504 GO:0003723
Vivi5g06490 289 Gene3D - 180 289 IPR012677 -
Vivi5g06490 289 FunFam Eukaryotic translation initiation factor 3 subunit G 172 289 - -
Vivi5g06490 289 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 21 285 - -
Vivi5g06490 289 Pfam Eukaryotic translation initiation factor 3 subunit G 31 156 IPR024675 -
Vivi5g06490 289 PIRSF Transl_init_eIF-3_RNA-bind 1 289 IPR017334 GO:0003743|GO:0005737|GO:0005852
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06490 Vivi-Chr5 171595888 171597625 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06490 1 289 Eukaryotic Initiation Factors Gene Family AT3G11400 66.254 4.39e-147 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06490 K03248 - gmx:100818725 481.1