Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06488 ATGGGAGAAAGAGATAATTGTAAGTCATTGATGGAAGACCTTCTTGGCCTTTTAAGAATTCGCATCAAGCGCGGTGTCAACCTCGCCATTCGTGATGTTAATACCAGCGATCCATACATCGTTGTTAAGATGGGCAAGCAGAAACTCAAGACTCGTGTGGTTAAAAAGGATATCAATCCTGAATGGAATGAAGATCTTACACTTTCGATCACCGATCCCGTTCTTCCATTCAAACTAACTGTGTATGATTATGACACATTTAGCAAAGATGACAATATGGGAGATGCTGAATTAGACGTTTCACCATTTATAGAGGCATTGAAGATGAACATAAACGATCTTCCAAGTGGTACTATAATCACCAGAATACAACCATGTAGGACAAATTGTTTGGCAGAAGAGAGTTGCATCAGTTATACAGATGGACAAATTGTCCAAGATGTTGTTCTTAGATTGCGACATGTTGAATGTGGTGAAGTTGAAATTCAATTGCAATGGATCGCTCTTCCTGGTTCCAAGGGTTTATAA 528 0.392 MGERDNCKSLMEDLLGLLRIRIKRGVNLAIRDVNTSDPYIVVKMGKQKLKTRVVKKDINPEWNEDLTLSITDPVLPFKLTVYDYDTFSKDDNMGDAELDVSPFIEALKMNINDLPSGTIITRIQPCRTNCLAEESCISYTDGQIVQDVVLRLRHVECGEVEIQLQWIALPGSKGL 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06488 175 Gene3D C2 domain 12 173 IPR035892 -
Vivi5g06488 175 SMART C2_3c 17 112 IPR000008 -
Vivi5g06488 175 CDD C2_ArfGAP 15 158 - -
Vivi5g06488 175 PRINTS C2 domain signature 32 44 IPR000008 -
Vivi5g06488 175 PRINTS C2 domain signature 77 85 IPR000008 -
Vivi5g06488 175 PRINTS C2 domain signature 56 69 IPR000008 -
Vivi5g06488 175 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 14 110 IPR035892 -
Vivi5g06488 175 ProSiteProfiles C2 domain profile. 1 113 IPR000008 -
Vivi5g06488 175 Pfam C2 domain 16 102 IPR000008 -
Vivi5g06488 175 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 13 173 IPR044562 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06488 Vivi-Chr5 171580012 171581266 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06488 48 175 C2H2 Transcription Factor Family AT1G70790 57.692 6.36e-50 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06488 - - gmx:100799469 285.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g06488 5 171580012 171581266 Vivi4g00356 4 7913352 7914809 PCT