Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06481 ATGTCTTCTGTCTTAGAACACTTGCTGGATGTGGAAGAACATCAGCAACAACAACATGTGGATTTTACTAAACCAAAATTCCAGATAAAAAATCTGACAAAAGATTCCGATGATGGAAAAATTCACATACTCAAAGGCATCACCGTTGACATTCCAAAGGGTATGATTGTTGGGATCATTGGCCCTAGTGGTAGCGGCAAGTCAACTCTCTTAAGGGCTTTGAATCGCCTCTGGGAGCCACCTTCCTCCTCCGTCTTCCTCGACGGGCAAGATATCTGCCACCTCGATGTTGTTTCCCTCCGCCGTAAGGTCGCCATGCTCTTTCAGCTCCCGGCTCTCTTTGAAGGGACAGTTGCGGACAACGTTAGATATGGTCCACAACTGAGGGGAGTAAAGCTAACAGATGACGAGGTGGGGAAGTTGCTGACAATGGCGGATCTGGATGCTTCTTTCATGGATAAGTCTGGTGCTGACCTCTCAGTAGGTCAGGCTCAAAGAGTTGCACTTGCAAGAACTCTAGCTAACTCACCTGAGGTTTTGCTGTTGGATGAACCTACTAGTGCATTAGATCCGATATCGACAGAAAACATAGAAGATGCTTTGATGAAGTTGAACAAGAATAAAGGCATGACACTGATCATGGTTTCTCATAGCATCAAACAAATTCAAAGGATGGCTGATGTAGTGTGTTTGGTGGTTGATGGTGAGATTGTTGAAGTCCTTAAGCCTAATCAACTCTCTCAAGCTGAACATCCTATGGCAAGAAGGTTTCTTGAACTAAGTTCTTAG 789 0.4474 MSSVLEHLLDVEEHQQQQHVDFTKPKFQIKNLTKDSDDGKIHILKGITVDIPKGMIVGIIGPSGSGKSTLLRALNRLWEPPSSSVFLDGQDICHLDVVSLRRKVAMLFQLPALFEGTVADNVRYGPQLRGVKLTDDEVGKLLTMADLDASFMDKSGADLSVGQAQRVALARTLANSPEVLLLDEPTSALDPISTENIEDALMKLNKNKGMTLIMVSHSIKQIQRMADVVCLVVDGEIVEVLKPNQLSQAEHPMARRFLELSS 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06481 262 Pfam ABC transporter 44 187 IPR003439 GO:0005524
Vivi5g06481 262 SMART AAA_5 53 243 IPR003593 GO:0016887
Vivi5g06481 262 PANTHER ABC TRANSPORTER I FAMILY MEMBER 17 4 261 IPR005670 GO:0005315|GO:0016020|GO:0035435
Vivi5g06481 262 CDD ABC_PstB_phosphate_transporter 27 246 IPR005670 GO:0005315|GO:0016020|GO:0035435
Vivi5g06481 262 ProSitePatterns ABC transporters family signature. 159 173 IPR017871 GO:0005524|GO:0016887
Vivi5g06481 262 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 26 249 IPR027417 -
Vivi5g06481 262 FunFam ABC transporter, ATP-binding protein 24 257 - -
Vivi5g06481 262 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 27 259 IPR003439 GO:0005524
Vivi5g06481 262 Gene3D - 24 261 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06481 Vivi-Chr5 171449894 171451375 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06481 18 260 Calmodulin-binding Proteins AT2G36910 30.000 2.62e-29 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06481 K02068 - gmx:100791365 392.504