Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06476 ATGGTGTGCCGTGAACTCAGTAAATCACGTTCGCATATGAATTTCCGTAGCAGTGATATTGTTGTCGTGGGTTACGATAGTATTGAATATCCGGCTAATAAGTACGACCAGATTTTCCGACATAGTTGGGAAAGGCTGGTCGTTGAGAACGTGATTTCTCAACAGAGCTGTGTGAAGCAGTATGTTCTGAGTCTTAATGCAAAGAAAAAGTGGGTATTAGAGGGAATCCCACCACAAGAGATGTCTCGTAACCAATTCAATTTTGTGTACTCACTTTTGTTTCCGGATGTTAAATCCAACGAGGTTCCTTTGGATTCGAGAGAAGAACTGTTGAGGGAGGTAACACTAAATCATGAAGATTTATATCCTTTTGGCTCTAAGGCTATGCAAACCGTTTCAATTACATTCACCCCTCAGGAAGAGGAAATCTACCTTGAAGCGCAGCAGTACGTACAAGAAAAACTGAAAGACGTTATCCTTGTCAACACAGAATTCATTCAGAATCTGGAACGTTGGATTATAAGGCTCAGGGAAATGGCGTCACACATATCCCTACGTCTCAAAATGGGAGATATAGAAGGGAATCCTAAAGCTTGGGCTGGGTTCAACAGTATTACATCAGACACCAAGTGTACGATTTGTCAGGATTATTTAAAGATCATCAAAACGGTGACTGCATGCGGCCATTGTTTTTGTGAAACTTGCTGGTTTGATTGGTTCCATACAAACATAACATGTTGTTTATGTCAGAGACTTGTGGATACTACTAGATTCTTTTCCTCCCCTTTGGATTGCGAAAGCTCAAAAGTAAGGGAATTGGTAAGCTTTTTATGCAGACCAGAGAACTTGCACAAGAAGTCAATGGTGACTTCAAAATTTGAATTGCTGTTAGGATGGCTGGAAGAGCATTTGGGAGGATTGGGTTTGACAGTTCACAGGATTGGTGGTGAGATGACTACTCAAGAGAGATTTCAAATGGTTAAGGAGTTTGAAGATGATGCTAATGTAATGGTTTTGCTGATACACGTAAAGTATGTTACCATGGAATTCACTTCAATCCATCATGTTTTTGTGATGGAAGCTATGAAGATATCAGTTGAGAATGAACTACTGAGTCATTTTAAAGGAACTGAATACAGCGCTCGTAGGTTTATAGTCAATAATTCCATTGAATCCAAAATCGTGGGAATGCATGATGAAGTACCAGAATATTTTGAAGAATTTAGTGGAGGTGAAATGCATAAGATTTTAACCTAG 1257 0.3954 MVCRELSKSRSHMNFRSSDIVVVGYDSIEYPANKYDQIFRHSWERLVVENVISQQSCVKQYVLSLNAKKKWVLEGIPPQEMSRNQFNFVYSLLFPDVKSNEVPLDSREELLREVTLNHEDLYPFGSKAMQTVSITFTPQEEEIYLEAQQYVQEKLKDVILVNTEFIQNLERWIIRLREMASHISLRLKMGDIEGNPKAWAGFNSITSDTKCTICQDYLKIIKTVTACGHCFCETCWFDWFHTNITCCLCQRLVDTTRFFSSPLDCESSKVRELVSFLCRPENLHKKSMVTSKFELLLGWLEEHLGGLGLTVHRIGGEMTTQERFQMVKEFEDDANVMVLLIHVKYVTMEFTSIHHVFVMEAMKISVENELLSHFKGTEYSARRFIVNNSIESKIVGMHDEVPEYFEEFSGGEMHKILT 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06476 418 ProSiteProfiles Zinc finger RING-type profile. 211 250 IPR001841 -
Vivi5g06476 418 SUPERFAMILY RING/U-box 205 256 - -
Vivi5g06476 418 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 199 261 IPR013083 -
Vivi5g06476 418 Gene3D - 126 362 IPR027417 -
Vivi5g06476 418 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 14 405 - -
Vivi5g06476 418 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 259 410 IPR027417 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06476 19 400 RAD5 or RAD16-like Gene Family AT5G05130 23.128 5.34e-18 84.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vivi5g06476 SNF2_N 1.5e-05 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06476 - K15710 vvo:131608212 838.95