Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06462 ATGGAAAAACTAAAGCACAGATCCATGGATCCAATCTTCATTCTCTTACTAATTCTACTCACTGCTCCATCACTATCTCTAGCAGATCTCGATTCCGAACGAGCTGCATTACTAGCTCTCCGTTCCTCCGTCGGCGGCCGAACCCTTTTCTGGAACGCTACCAACCAAACTCCATGCAACTGGGCCGGTGTCCAATGCGACGACAACCGTGTCGTCGAGCTTCATCTCCCCGGCGTCGCTCTCTCCGGTCAAATACCTACCGGCATATTCTCCAACCTAACTCACCTCCGTACTCTCAGTCTTCGTTTCAATGCTCTCACTGGTTCACTCCCTTCAGATCTCGCTTCCTGTGTCAACCTCAGGAACCTTTATCTCCAACGAAACCTTCTCTCCGGCGAAATCCCTCTCTTTCTCTTTAACTTACCCGATTTGGTTCGACTCAACATGGGGTTTAACAACTTCTCAGGTCCCATTTCAACCTCATTCAACAACTTCACCAGACTCAAAACCCTCTACCTTGAAAACAACCACCTTTCAGGCTCTATACCGGAACTCACTCGTTTGAGCCTCGATCAGTTCAATGTCTCTAACAATATCTTAAACGGCTCTGTTCCCGTTAAGCTTCGGACTTTCCCTCAAGATTCCTTTTTGGGAAATTCTCTATGCGGTAGACCTCTTTCTCTTTGCCCCGGGGAGACTGATGATTCCTCTCCTTTCACTGCCGACGGAGGTAATGCCAGTAAGAAGAAGAAAAACTTGTCTGGAGGAGCCATTGCGGGAATTGTCATTGGATCTATCGTGTTTCTTCTTTTGCTCGTTTTCCTTTTCATCTTCTTATGTAGGAAAAAGAGCAGCAAGACAACCAGTGCTGTTGATGTTGCTACCGTGAAGCATTCTGAATCTGATGTTCCTCGTGACAAGTCTATTCCGGACATGGAGAACGGGAACGGATTCGCTTCATCTACTGCCGCTGCTGCCGCGGCAGTGGTTGCAGTCAACAAGGTTGAAGCTAATGGAAATGGAAACGCTGCTGGTGGAGCTAAGAAGTTGATATTTTTTGGGAATGCACCGAGGGCTTTTGATCTAGAGGATCTGTTGAGGGCTTCGGCCGAGGTGTTGGGTAAAGGGACATTCGGGACAGCATATAAGGCGGTTTTGGAGTCAGGGCCGGTGGTGGCGGTGAAAAGGTTGAAGGATGTGACGATAAATGAGAAGGAGTTCAGAGAGAAAATTGAAGCAGTTGGAGCAGTGGATCATCAGAGTTTGGTGCCTTTAAGAGCTTACTATTTTAGCAGAGATGAGAAACTTCTTGTTTATGATTACATGTCAATGGGAAGCCTCTCTGCACTTTTGCATGGAAACAAAGGAGCAGGTAGGACACCATTGAATTGGGAAATGAGATCAAGCATTGCACTAGGAGCAGCCCAAGGCATTGAGTTCCTTCATTCACAAGGGCCTAATGTTTCTCATGGAAACATAAAGTCATCTAATATTCTCTTAACCAAATCATATGAGGCAAAAGTGTCTGATTTTGGGCTTGCACAGCTTGTCGGCCCATCCTCTACCCCAAACCGTGTTGCTGGATACCGTGCACCTGAAGTGACAGATCCTCGCAAAGTATCTCAAAAGGCAGATGTGTACAGTTTTGGCGTATTGCTCTTAGAACTTCTAACCGGGAAGGCACCTACACACGCTCTTCTAAATGAAGAAGGGGTTGACCTTCCAAGATGGGTTCAATCTGTGGTTAGAGAAGAGTGGACTTCTGAGGTGTTTGATCTCGAGCTCCTAAGGTATCAGAATGTTGAAGAGGAGATGGTTCAGTTGCTTCAACTTGCTGTTGATTGTGCAGCACAATACCCTGACAAGCGACCATCCATGTCTGATGTTGTACGAAGCATAGAAGAATTACGTCGATCTAGCTTGAAAGATGAGCAAGACCAAATCCAACATGACAACAATGATATAGAATTGTAG 1974 0.463 MEKLKHRSMDPIFILLLILLTAPSLSLADLDSERAALLALRSSVGGRTLFWNATNQTPCNWAGVQCDDNRVVELHLPGVALSGQIPTGIFSNLTHLRTLSLRFNALTGSLPSDLASCVNLRNLYLQRNLLSGEIPLFLFNLPDLVRLNMGFNNFSGPISTSFNNFTRLKTLYLENNHLSGSIPELTRLSLDQFNVSNNILNGSVPVKLRTFPQDSFLGNSLCGRPLSLCPGETDDSSPFTADGGNASKKKKNLSGGAIAGIVIGSIVFLLLLVFLFIFLCRKKSSKTTSAVDVATVKHSESDVPRDKSIPDMENGNGFASSTAAAAAAVVAVNKVEANGNGNAAGGAKKLIFFGNAPRAFDLEDLLRASAEVLGKGTFGTAYKAVLESGPVVAVKRLKDVTINEKEFREKIEAVGAVDHQSLVPLRAYYFSRDEKLLVYDYMSMGSLSALLHGNKGAGRTPLNWEMRSSIALGAAQGIEFLHSQGPNVSHGNIKSSNILLTKSYEAKVSDFGLAQLVGPSSTPNRVAGYRAPEVTDPRKVSQKADVYSFGVLLLELLTGKAPTHALLNEEGVDLPRWVQSVVREEWTSEVFDLELLRYQNVEEEMVQLLQLAVDCAAQYPDKRPSMSDVVRSIEELRRSSLKDEQDQIQHDNNDIEL 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06462 657 SUPERFAMILY Protein kinase-like (PK-like) 371 633 IPR011009 -
Vivi5g06462 657 SUPERFAMILY L domain-like 51 208 - -
Vivi5g06462 657 ProSiteProfiles Leucine-rich repeat profile. 167 189 IPR001611 GO:0005515
Vivi5g06462 657 FunFam pollen receptor-like kinase 1 336 441 - -
Vivi5g06462 657 PANTHER OS05G0588300 PROTEIN 14 640 - -
Vivi5g06462 657 ProSiteProfiles Protein kinase domain profile. 367 636 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g06462 657 Gene3D Ribonuclease Inhibitor 143 229 IPR032675 -
Vivi5g06462 657 FunFam Probable inactive receptor kinase At1g48480 442 645 - -
Vivi5g06462 657 Gene3D Transferase(Phosphotransferase) domain 1 442 656 - -
Vivi5g06462 657 CDD STKc_IRAK 373 636 - -
Vivi5g06462 657 ProSitePatterns Protein kinases ATP-binding region signature. 373 395 IPR017441 GO:0005524
Vivi5g06462 657 FunFam Probable inactive receptor kinase RLK902 30 186 - -
Vivi5g06462 657 Gene3D Ribonuclease Inhibitor 32 141 IPR032675 -
Vivi5g06462 657 Gene3D Phosphorylase Kinase; domain 1 338 441 - -
Vivi5g06462 657 Pfam Leucine rich repeat N-terminal domain 31 67 IPR013210 -
Vivi5g06462 657 Pfam Leucine rich repeat 84 130 IPR001611 GO:0005515
Vivi5g06462 657 Pfam Protein kinase domain 370 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06462 Vivi-Chr5 171302400 171305340 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06462 29 647 Receptor kinase-like Gene Family AT1G48480 63.810 0.0 793
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vivi5g06462 Pkinase 3.9e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06462 - - gmx:100818955 974.541