Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06459 ATGAGCTTGCAAAGGAGGGATAGGAAATGGATTCCCAGACCATCATCATCCTCCACCACCCACCACCACAATACCCGCCGGGATTCTGATTTAAATTTACCTCAACTGCTGCAAGAGATTCAGGACAAGCTCACCAAAGGCACTGTCGAATGTATGATTTGCTATGACACCGTCCGGAGGTATGCGCCTATCTGGTCATGCTCCAGTTGCTACTCTATCTTTCACCTCAACTGCACAAACAAGTGGGCTCGTGCACCAACTTCATCTGCATCTGCTCACAACACTAATCATTGGCGATGCCCCGGTTGTCAGGCTGTGCAACAAACATCATCCAATTCCATTAGGTACTTGTGCTTCTGTGGGAAAAGGTTTGACCCTCCATCCGATTTCTATCTCACACCGCATTCGTGCGGAGAACCGTGCCGGAAGCCTCTTCAGAAGACCGGGGATCTTTGCCCTCATGTTTGTGTCTTGCAATGCCATCCTGGTCCATGTCCTCCTTGCAAAGCATTTGCTCCTCCCCATTTGTGCCCTTGTGGCAAGACTACTATTACAACTCGCTGTTCTGAACCTCAATCTCTTCTTACCTGTGGCCAACAATGTCAAAAGCTTCTTCAATGTGGGCGACATCACTGTCAACAAATTTGTCATATTGGTCCCTGTGATCCTTGCCGTGTTCCAATGGATGCCTCTTGCTTTTGCAGTAAAAAGTATGAGGCTATTCTTTGTGGAGACATGGCTGTGAAGGGTGAAATCAAAGCAGAAGATGGAGTTTTTTCTTGTGCTTCCACTTGTGGAAAGAAACTAAGTTGTGGCAATCATGTCTGTATGGAGACCTGTCATTCAGGCAGCTGTGCGGAGTGTGAGTTGTTGCCAGCCCATGTTAAGATGTGTTGCTGTGGGAAAACTAGATTGAAAGAGGAACGGCAGACTTGCTTAGACCCAATTCCTACCTGTTCACAACTATGTGGCAAGTCCCTTGCCTGCGGGATGCATCGTTGTAACGAGACATGCCATGACGGGGATTGCTCTCCTTGTTTGGTTTTAGTCTCCCAAAAGTGTCGGTGTGGCTCAACTTCCAGAATGGTGGAGTGCTATAAGACAACAACCGAGGATGAGAAGTTTACATGTGAAAAGCCCTGTGAGAAGAAAAAGAACTGTGGAAGGCATCGTTGTAGTGAACGGTGTTGTCCATTTTCTAATCCAAATAATATTCTAAATGCAGATTGGGATCTACACCTCTGTTCCATTTCATGTGGAAAGAAGTTACGCTGTGGGCAGCATGCGTGTGATTCCCTATGTCACAGTGGTCATTGTCCACCTTGTCTTCAAACTATATTCACTGATTTGGTATGTGCTTGTGGCAAGACTTCAATCCCTCCTCCATTACCATGTGGCACACCACTGCCCTCATGTCAGCTTCCATGTTCAGTTCCTCAGCCTTGTGGTCACCCAGCCTCCCATAGCTGTCATTATGGAGATTGCCCTCCTTGTTCGGTGCCTGTTGCAAGAGAATGTACTGGTGGACATGTAGTTCTTAGGAACATACCTTGTTCCTCAAAGGATATTCGATGTAATAAGCTCTGCGGGAAGACTAGACAGTGTGGTTTACATGCTTGTGGGAGATCGTGTCACTCCACGCCTTGTGATAATCAGCCTGCTGTGCAAGGTATTCGAATTTCTTGTGGGCAAACATGTGGCGCTCCAAGGAGAGACTGCCGGCATATATGTACAGCTCCTTGTCACCCTTCATCTCCATGTCCAGAAAGAAGATGTGAATTCCCTGTCACAATCACTTGTACTTGTGGCCGAATGACAACTAACGTCCCTTGTGATGCTGGTGGCAGTGGTGCTCCTGACGTTATACATGAAGCTTCCATTACTCAAAAGGTGCTAATGCCACTTCAACCATTGGATGAAAATGGCAAAAGAGTTTCCCTAGGACAACGGAAACTGATGTGTAATGATGAGTGTGCTAAGTTGGAGCGTAAAAAGGTACTTGCAAATGCTTTTGAGATTACATCTCCAAATTTAGATTCTTTCCAATTTGGGGATAATTCTGTTGCACAGTCTGAATTACTTGGTGATCTATTGAGGCGTGATAGTAAATGGGTTTTATCCATTGAGGAGAGATGCAAGTTTTTAGTACTTGGCAAGAGCAGAGGAACTACGCAGGGTCTAAAAGCCCATGTTTTCTGTCCCATGCTAAAGGATAAGAGAGATGCAGTGAGGATGATTGCTGAGAGATGGAAGCTTGCAATAAATGCAGCTGGTCGGGAGCCAAAGCAATTTATAGTTGTTCATGTTGTCAAAAAGTCAAGAGCTCCATCACGCGTGCTAGGGATTAAGGGTACTACAACCATACATGCGCCCCTTCCTCCTGCATTTGAACCTTTGGTAGATATGGATCCTCGATTTGTCGTCTCTTTTCCAGAATTACCAAGACATGCAGATATCAGTGCATTGGTTTTGAGATTTGGTGGTGAGTGTGAACTTGTTTGGTTAGATGACAAAAATGCATTGGCTGTTTTTAATGATCCTGCACGAGCTGCGGCTGCAATGAGAAGGTTAGATCATGGAAGTGTTTATCAGGGAGCTATTGTGATTGTTCCAAAGGTAGGGGCATCTGTAGTATCTACAGTTACAAATGCCTGGGGAGGAGCTGGGACAGTGAAAGGAGGGACATTGGCAGCATGGAAAGGGAATCTCTTGACAAAGGCTATTGTTATAGAACCAAGTTGGAGAGAAGATTCTTGGGATGATGAGGAGGGGGCTACCGGTTCTGCGAATATCCAGTCATCTATTTGGAAGAAAGAAGTGCCGATATCTACTTCAGCAAATCCTTGGAGTATCTTAGATAAAAAATGGTCTTCAAATTCATCTGCTGCTGCTTCTGTCAAAGCTGACATTTCTACGAAACAAACACAAAGTAGTGCTGCGGCGAAGTTGGAATCTCTTGATGGTGGTTCAAATCTAGAACACCAGCCTGGAAAAGCCTTAGACACTTCAGAAGTTAATGATGTAGTAGATGATTGGGAGAAGGCTTGTGAATGA 3054 0.4538 MSLQRRDRKWIPRPSSSSTTHHHNTRRDSDLNLPQLLQEIQDKLTKGTVECMICYDTVRRYAPIWSCSSCYSIFHLNCTNKWARAPTSSASAHNTNHWRCPGCQAVQQTSSNSIRYLCFCGKRFDPPSDFYLTPHSCGEPCRKPLQKTGDLCPHVCVLQCHPGPCPPCKAFAPPHLCPCGKTTITTRCSEPQSLLTCGQQCQKLLQCGRHHCQQICHIGPCDPCRVPMDASCFCSKKYEAILCGDMAVKGEIKAEDGVFSCASTCGKKLSCGNHVCMETCHSGSCAECELLPAHVKMCCCGKTRLKEERQTCLDPIPTCSQLCGKSLACGMHRCNETCHDGDCSPCLVLVSQKCRCGSTSRMVECYKTTTEDEKFTCEKPCEKKKNCGRHRCSERCCPFSNPNNILNADWDLHLCSISCGKKLRCGQHACDSLCHSGHCPPCLQTIFTDLVCACGKTSIPPPLPCGTPLPSCQLPCSVPQPCGHPASHSCHYGDCPPCSVPVARECTGGHVVLRNIPCSSKDIRCNKLCGKTRQCGLHACGRSCHSTPCDNQPAVQGIRISCGQTCGAPRRDCRHICTAPCHPSSPCPERRCEFPVTITCTCGRMTTNVPCDAGGSGAPDVIHEASITQKVLMPLQPLDENGKRVSLGQRKLMCNDECAKLERKKVLANAFEITSPNLDSFQFGDNSVAQSELLGDLLRRDSKWVLSIEERCKFLVLGKSRGTTQGLKAHVFCPMLKDKRDAVRMIAERWKLAINAAGREPKQFIVVHVVKKSRAPSRVLGIKGTTTIHAPLPPAFEPLVDMDPRFVVSFPELPRHADISALVLRFGGECELVWLDDKNALAVFNDPARAAAAMRRLDHGSVYQGAIVIVPKVGASVVSTVTNAWGGAGTVKGGTLAAWKGNLLTKAIVIEPSWREDSWDDEEGATGSANIQSSIWKKEVPISTSANPWSILDKKWSSNSSAAASVKADISTKQTQSSAAAKLESLDGGSNLEHQPGKALDTSEVNDVVDDWEKACE 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06459 1017 CDD NF-X1-zinc-finger 415 467 - -
Vivi5g06459 1017 MobiDBLite consensus disorder prediction 963 1017 - -
Vivi5g06459 1017 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 21 921 IPR034078 GO:0003700
Vivi5g06459 1017 Coils Coil 1013 1017 - -
Vivi5g06459 1017 CDD NF-X1-zinc-finger 319 367 - -
Vivi5g06459 1017 ProSiteProfiles Zinc finger PHD-type profile. 48 106 IPR019787 -
Vivi5g06459 1017 Gene3D - 800 865 IPR012677 -
Vivi5g06459 1017 ProSiteProfiles Zinc finger RING-type profile. 51 104 IPR001841 -
Vivi5g06459 1017 Pfam NF-X1 type zinc finger 207 225 IPR000967 GO:0005634|GO:0008270
Vivi5g06459 1017 Pfam NF-X1 type zinc finger 535 550 IPR000967 GO:0005634|GO:0008270
Vivi5g06459 1017 Pfam NF-X1 type zinc finger 329 346 IPR000967 GO:0005634|GO:0008270
Vivi5g06459 1017 Pfam NF-X1 type zinc finger 387 398 IPR000967 GO:0005634|GO:0008270
Vivi5g06459 1017 Pfam NF-X1 type zinc finger 154 169 IPR000967 GO:0005634|GO:0008270
Vivi5g06459 1017 Pfam NF-X1 type zinc finger 482 499 IPR000967 GO:0005634|GO:0008270
Vivi5g06459 1017 Pfam NF-X1 type zinc finger 271 288 IPR000967 GO:0005634|GO:0008270
Vivi5g06459 1017 Pfam NF-X1 type zinc finger 425 442 IPR000967 GO:0005634|GO:0008270
Vivi5g06459 1017 SMART znfxneu3 535 564 IPR000967 GO:0005634|GO:0008270
Vivi5g06459 1017 SMART znfxneu3 482 500 IPR000967 GO:0005634|GO:0008270
Vivi5g06459 1017 SMART znfxneu3 152 170 IPR000967 GO:0005634|GO:0008270
Vivi5g06459 1017 SMART znfxneu3 573 594 IPR000967 GO:0005634|GO:0008270
Vivi5g06459 1017 SMART znfxneu3 387 417 IPR000967 GO:0005634|GO:0008270
Vivi5g06459 1017 SMART znfxneu3 207 226 IPR000967 GO:0005634|GO:0008270
Vivi5g06459 1017 SMART znfxneu3 329 348 IPR000967 GO:0005634|GO:0008270
Vivi5g06459 1017 SMART znfxneu3 425 444 IPR000967 GO:0005634|GO:0008270
Vivi5g06459 1017 SMART znfxneu3 271 290 IPR000967 GO:0005634|GO:0008270
Vivi5g06459 1017 CDD NF-X1-zinc-finger 137 190 - -
Vivi5g06459 1017 CDD NF-X1-zinc-finger 261 304 - -
Vivi5g06459 1017 CDD NF-X1-zinc-finger 197 245 - -
Vivi5g06459 1017 CDD NF-X1-zinc-finger 562 611 - -
Vivi5g06459 1017 CDD NF-X1-zinc-finger 472 520 - -
Vivi5g06459 1017 MobiDBLite consensus disorder prediction 1 28 - -
Vivi5g06459 1017 MobiDBLite consensus disorder prediction 963 984 - -
Vivi5g06459 1017 ProSitePatterns Zinc finger PHD-type signature. 51 103 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06459 Vivi-Chr5 171253670 171257704 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Vivi5g06459 zf-NF-X1 0.00024 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06459 K12236 - gmx:106799700 1640.94