Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06447 ATGCAAGAGGCAGGGATCGAACCCCTGCCCTTGCGTATCAAACACTTATATCCAACGCGCTCATCACCAGACCACCGCCCATTCGCTGCTAACCTGGAACATTTGTTATTAGTATGTGAACTACTTAAAGCAAACTTATACGAGTTTCATAAATTTAATAGAGAATCAGGGGGTGAAGTTTACTTTACGATGCCGAGGTTGCAGTCAATTACCATTCAGTGTTTGGAAGCACTTCAATTTTTGCATAGCCTTGGACTGATACATTGTGACTTGAAGCCAGAGAATATATTGGTTAAAAGTTATAGCAGATGTGAAATCAAGGTCATTGATCTTGGAAGTAGTTGTTTTGAGACAAATCACCTTTCCTCGTATGTTCAGTCAAGGTCCTATCGTGCTCCTGAAGTTATTTTGGGACTTCCATATGACAAGAAGATTGATATTTGGTCACTTGGCTGCATCTTGGCAGAGCTTTGTATTGGCAACGTTATCTTCCAAAGCGATTCACCGACAACATTACTTGCTCGTATTATCGGGATAATTGATCCAATAGATCAAAGTATGCTTGCAAAAGGATGTGATACATACAAGTACTTCACCAAAAATCATATGCTTTATGAACGGAATCAAGAAAGCAATAGGTTAGAATACTTGATTCCGAAAAAGACATCGTTGAGGCATAGATTACATATGGGAGACGAAGGGTTTATTGAGTTTGTTGGTCATTTGCTTGAGATCAACCCAAAGAAGAGGCCGGCTGCATCCGAAGCTCTGAAGCACCCTTGGTTGTCTTACCCTTACGAACCTATATCATCTTGA 816 0.4044 MQEAGIEPLPLRIKHLYPTRSSPDHRPFAANLEHLLLVCELLKANLYEFHKFNRESGGEVYFTMPRLQSITIQCLEALQFLHSLGLIHCDLKPENILVKSYSRCEIKVIDLGSSCFETNHLSSYVQSRSYRAPEVILGLPYDKKIDIWSLGCILAELCIGNVIFQSDSPTTLLARIIGIIDPIDQSMLAKGCDTYKYFTKNHMLYERNQESNRLEYLIPKKTSLRHRLHMGDEGFIEFVGHLLEINPKKRPAASEALKHPWLSYPYEPISS 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06447 271 PANTHER DUAL SPECIFICITY PROTEIN KINASE 33 262 - -
Vivi5g06447 271 Gene3D Phosphorylase Kinase; domain 1 31 41 - -
Vivi5g06447 271 SUPERFAMILY Protein kinase-like (PK-like) 33 264 IPR011009 -
Vivi5g06447 271 Pfam Protein kinase domain 32 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g06447 271 ProSitePatterns Serine/Threonine protein kinases active-site signature. 86 98 IPR008271 GO:0004672|GO:0006468
Vivi5g06447 271 SMART serkin_6 11 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g06447 271 FunFam Serine/threonine-protein kinase ppk15 39 263 - -
Vivi5g06447 271 ProSiteProfiles Protein kinase domain profile. 1 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g06447 271 Gene3D Transferase(Phosphotransferase) domain 1 42 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06447 Vivi-Chr5 171129466 171146132 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06447 35 263 Core Cell Cycle Gene Families AT1G76540 29.614 2.15e-23 95.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-PRP4 Vivi5g06447 Pkinase 4.8e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06447 - - psat:127107989 462.996