Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06437 ATGAATGGGAAAGCCTCCATCTCTAAGGAGCTCAATGCCAAGCACACCAAGATCTTGGAAGGACTTCTAAAGCTGCCTGAAAACAGGGAATGTGCTGATTGCCGGAACAAGGCTCCGAGATGGGCAAGTGTGAACCTAGGGATTTTTATTTGCATGCAATGTTCAGGGATTCACAGAAGCCTTGGAGTGCATATATCAAAGGTGCGGTCCACAACTTTGGATACATGGTTGCCGGCTCAAGTTTCTTTCATGCAGTTTATGGGTAACCACAAGTCAAATAAACACTGGGAGACAGATCTTCCTCCCAATTTTGACACAAGTAGATTGGAAATTGAAAAGTTTATCCGTGCCAAGTATGTAGAGAAAAGATGGGCTTCAAAAAATAAACTAGAATCAACTTCAAAGTTGGCTGAAAATATTGTGAACTTTAATGAGTTGCCATATGGTGGGGCTAGGAGTGGTTTTCCGAAGAACAGTAGGAGACTTTCTCTTGAAGAAAGCATTCTTGTAAACCACTTGGCACAAGTTCTGCCGCCTGTAACAAGATCCCGTGAGATTCGGGGTTCTTTGGACAAGCAAAAGAAGAGTTCACCTCCATTAAAGAGACCGTCATCATCAGTTGATTTTGACAAGTCCCCAGGAAAGAGTGCTGAATTTTTCAATTTGCTTTGCATCCATGACAATAAGCAGACCTTGTCAACCGTACCTCCTTCAAGCTGGGCTACATTTGATTGA 735 0.4286 MNGKASISKELNAKHTKILEGLLKLPENRECADCRNKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWLPAQVSFMQFMGNHKSNKHWETDLPPNFDTSRLEIEKFIRAKYVEKRWASKNKLESTSKLAENIVNFNELPYGGARSGFPKNSRRLSLEESILVNHLAQVLPPVTRSREIRGSLDKQKKSSPPLKRPSSSVDFDKSPGKSAEFFNLLCIHDNKQTLSTVPPSSWATFD 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06437 244 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 244 IPR044520 GO:0005096
Vivi5g06437 244 MobiDBLite consensus disorder prediction 185 214 - -
Vivi5g06437 244 SMART arf_gap_3 16 130 IPR001164 GO:0005096
Vivi5g06437 244 SUPERFAMILY ArfGap/RecO-like zinc finger 15 126 IPR037278 -
Vivi5g06437 244 FunFam stromal membrane-associated protein 1 isoform X1 1 130 - -
Vivi5g06437 244 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 132 IPR001164 GO:0005096
Vivi5g06437 244 CDD ArfGap 19 119 - -
Vivi5g06437 244 Pfam Putative GTPase activating protein for Arf 17 127 IPR001164 GO:0005096
Vivi5g06437 244 Gene3D Arf GTPase activating protein 2 133 IPR038508 -
Vivi5g06437 244 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Vivi5g06437 244 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Vivi5g06437 244 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06437 Vivi-Chr5 171110462 171115607 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06437 22 119 C2H2 Transcription Factor Family AT4G05330 49.038 1.99e-27 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06437 K12486 - gmx:100803735 392.119