Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06436 ATGAATGGGAAAGCCTCCATCTCTAAGGAGCTCAATGCCAAGCACACCAAGATCTTGGAAGGACTTCTAAAGCTGCCTGAAAACAGGGAATGTGCTGATTGCCGGAACAAGGCTCCGAGATGGGCAAGTGTGAACCTAGGGATTTTTATTTGCATGCAATGTTCAGGGATTCACAGAAGCCTTGGAGTGCATATATCAAAGGTGCGGTCCACAACTTTGGATACATGGTTGCCGGCTCAAGTTTCTTTCATGCAGTTTATGGGTAACCACAAGTCAAATAAACACTGGGAGACAGATCTTCCTCCCAATTTTGACACAAGTAGATTGGAAATTGAAAAGTTTATCCGTGCCAAGTATGTAGAGAAAAGATGGGCTTCAAAAAATAAACTAGAATCAACTTCAAAGTTGGCTGAAAATATTGTGAACTTTAATGAGTTGCCATATGGTGGGGCTAGGAGTGGTTTTCCGAAGAACAGTAGGAGACTTTCTCTTGAAGAAAGCATTCTTGTAAACCACTTGGCACAAGTTCTGCCGCCTGTAACAAGATCCCGTGAGATTCGGGGTTCTTTGGACAAGCAAAAGAAGAGTTCACCTCCATTAAAGAGACCGTCATCATCAGTTGATTTTGACAAGTCCCCAGGAAAGAGTGCTGAATTTTTCAATTTGCTTTGCATCCATGACAATAAGCAGACCTTGTCAACCGTACCTCCTTCAAGCTGGGCTACATTTGATTGTATGACTTGA 744 0.4274 MNGKASISKELNAKHTKILEGLLKLPENRECADCRNKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWLPAQVSFMQFMGNHKSNKHWETDLPPNFDTSRLEIEKFIRAKYVEKRWASKNKLESTSKLAENIVNFNELPYGGARSGFPKNSRRLSLEESILVNHLAQVLPPVTRSREIRGSLDKQKKSSPPLKRPSSSVDFDKSPGKSAEFFNLLCIHDNKQTLSTVPPSSWATFDCMT 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06436 247 MobiDBLite consensus disorder prediction 185 212 - -
Vivi5g06436 247 SMART arf_gap_3 16 130 IPR001164 GO:0005096
Vivi5g06436 247 SUPERFAMILY ArfGap/RecO-like zinc finger 15 126 IPR037278 -
Vivi5g06436 247 Gene3D Arf GTPase activating protein 2 133 IPR038508 -
Vivi5g06436 247 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Vivi5g06436 247 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Vivi5g06436 247 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Vivi5g06436 247 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 132 IPR001164 GO:0005096
Vivi5g06436 247 Pfam Putative GTPase activating protein for Arf 17 127 IPR001164 GO:0005096
Vivi5g06436 247 CDD ArfGap 19 119 - -
Vivi5g06436 247 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 244 IPR044520 GO:0005096
Vivi5g06436 247 FunFam stromal membrane-associated protein 1 isoform X1 1 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06436 Vivi-Chr5 171110462 171115954 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06436 19 119 C2H2 Transcription Factor Family AT4G05330 47.664 2.66e-27 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06436 K12486 - gmx:100803735 392.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g06436 5 171110462 171115954 Vivi2g05854 2 188491208 188494541 PCT