Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06433 ATGGGGTGGTGCAGCGAGGTTATCACACTGTCACTCGCTCCTCCTCCTGTAGGTTTATTCAGCAATAATAATAAAAGTGCGGTGTTTCAATTTCAAAAGCCTTTGTTAAAATTCAAATTCAACAACTCCACTCTTGTTATTCATCGGAACCCGCCGTTGGCTGCTCAACTACAACAACCGTCGTCGTCGTCAAGTTCAAGGGATTTTGTTGTGGTTAATTTCTACCATTTTGTGTTCATCAAAAACCCACAGCAACAAGTCGCCAAACACCTCTCTTTCTTGGAATTGGAGGGTCTAGACATCAATGGAAGAGTTTATTTGAATGAACAAGGGATTAATGCGCAGTATAGTGGGCCATCAAAAGACGCTATGGCGTATGTCAACTGGATAAAAGAGGATAGCAGGTTTTCCGACATCCTCGTTCAGATATCTCCATCACAAACTGGACACACCTTTCCATCATTGAAGTTGCGCTATAAGCCTTCATTAGTACAGTTTAAAGGTGGCATATCAGATCTTTCATTGCTCGATCCTTCAATGCGGGCATTACCTTTATCACCTTCAGAATGGAGAAAGAGATTAGAAGTCATCAATAAAAATGATCCGCATTCAAAAGATTATACCAACAGAAATAACATTATATTGGATGTGAGAAATGGTTATGAGTGGGACATTGGACATTTTCGTGGGGCTCAACGGCCTAACGTGGACTGTTTTAGGAGCACTTCATTTGGATTGTCTCAAGAAAAGATCACTGCTTCAGACCCTTTGTCAAATGTAGATAAAGAAAATGCAAACATATTGATGTATTGCACAGGAGGGATTCGGTGTGATGTGTATTCTACAATACTGAGGCAGCATGGATTTCAGAATTTGTATACTCTGAAGGGAGGTGTTTCTCACTATATAAAGAATGAAGGTGCTGCAGAATGGATAGGAAATTTATTTGTATTTGACTCCCGACTGTCTCTCCCTCCTCCTGTTTACTATCCTCAGGCCATTCCTGAAGGTAGGATGACTCCAGTTTCTAGAGATGATAAGTTCGCCAAATGCTACATATGTAATGTAGAAGTCAGTGAACTGAGACATCGGAATTGTGCAAATCTTGACTGTAACTTGCTTTTTCTATGCTGCAGAAAATGCGTTAAGGATCTAAGAGGATGTTGTTGTTTGACTTGTACTACTGCCCCTAGGCTTAGACCCGCTTTAATTGGAGAGCAGAGATACAGAAAATGGCACATTTATCGTGACATGGATTTGCAAGGCAAGGGGAATTGA 1278 0.4085 MGWCSEVITLSLAPPPVGLFSNNNKSAVFQFQKPLLKFKFNNSTLVIHRNPPLAAQLQQPSSSSSSRDFVVVNFYHFVFIKNPQQQVAKHLSFLELEGLDINGRVYLNEQGINAQYSGPSKDAMAYVNWIKEDSRFSDILVQISPSQTGHTFPSLKLRYKPSLVQFKGGISDLSLLDPSMRALPLSPSEWRKRLEVINKNDPHSKDYTNRNNIILDVRNGYEWDIGHFRGAQRPNVDCFRSTSFGLSQEKITASDPLSNVDKENANILMYCTGGIRCDVYSTILRQHGFQNLYTLKGGVSHYIKNEGAAEWIGNLFVFDSRLSLPPPVYYPQAIPEGRMTPVSRDDKFAKCYICNVEVSELRHRNCANLDCNLLFLCCRKCVKDLRGCCCLTCTTAPRLRPALIGEQRYRKWHIYRDMDLQGKGN 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06433 425 SMART rhod_4 186 308 IPR001763 -
Vivi5g06433 425 Gene3D - 177 330 IPR036873 -
Vivi5g06433 425 Pfam Rhodanese-like domain 209 303 IPR001763 -
Vivi5g06433 425 Gene3D - 57 164 - -
Vivi5g06433 425 PANTHER THIOSULFATE SULFURTRANSFERASE/RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 2 62 416 IPR020936 -
Vivi5g06433 425 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 207 323 IPR036873 -
Vivi5g06433 425 Pfam Rhodanase C-terminal 313 394 IPR022111 -
Vivi5g06433 425 Pfam UPF0176 acylphosphatase like domain 70 161 IPR040503 -
Vivi5g06433 425 CDD RHOD_YceA 185 304 - -
Vivi5g06433 425 ProSiteProfiles Rhodanese domain profile. 208 311 IPR001763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06433 Vivi-Chr5 171080003 171099795 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06433 68 421 Sulfurtransferasese or Rhodanese AT1G17850 64.835 9.15e-179 504
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06433 - - mtr:25488455 661.759