Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06390 ATGATAACCGATATGAAAAGTGGTGGTGCAGATGCAGGTGCCTTGGGAGCCAAGACAGCGAGAGCTTGTGATAGCTGTATGAGAAGAAGGGCACGTTGGTTCTGTGCTGCTGATGATGCTTTTCTTTGTCATGGTTGTGACAATTTGGTTCATTCGGCGAATCAGTTAGCGAGTAGACACGAAAGGGTTCGCCTTCAAACCGCGTCTGGTAAGGTAGCAACGACGACAGCAACTGCGAAAGCATGGCATAGTGGATTCACTAGAAAGGCGAGGACGCCGCGTCATAATAAGAATTCGTCGATTCAACAACAGCAGCAACGGCTTAAGGAGAAGGTTCTTTTTAATACTAGTTTTCTTCCGCTCGTTCCTGAGCTCGGAGGTGAGGAAGAAGAAGAAGAACGGGAACGGGAATTACTAGTTGATATTAATGAGATTGCGGGGGAGGAGGAGGAGGAGCAGTTGCTGTGTCGCGTCCCGGTTTTTGATGTAGGCCCTTTTGATTTAGAGAATTGTAATGTGAAAAATGATGCTGCTGATTTCGAGGACATGTGTGATTTGGATAGTTTCTGTGAGTTTGATGTTGATCTTGCTGAGTTTGCAGCAAATGTTGAGAGTTTACTTGGTGTTGGGAGTAGCGAGATTCATGAGAATTCGTCGGAACAAGTGTTTGATTATAAACAAGAGAATGAAATGGATCCATCCAAAAATGAAGTATTGAAGGTTAAAGATGAAGAACTTGATGACTTGGAATCGGTTTTTGATATGACAAGTGATGAAGTTTTTCATTGGAATATTGATCATGATGAATCAATGGGACACCAAGAGAAAGAGTTTATGCCTTTGAGTATTAATAGTAGTGTTGGTGTTAGTGAGAGTGTTATTACTAAAGAGGAAACTAAAAGAGAGAGATTTTTGAGACTAAACTATGAAGATGTTATTAGTGCTTGGACTAGGCAAGGCTCTCCTTCTCCATGGACTACCGGAAACCCTCCTAAGTTCAACTCCGAAGATGATTCATGGCAAAACTTCTTGGGTTCAAGTGGTGTAGAAGGAGAAATAAGAACCCTAAGAGGGAACTTAATAGGAAGTAATGGAGATGGAGGAAGAGAAGCAAGAGTATCAAGGTATAGAGAGAAAAGAAGAACACGTTTGTTTGCAAAGAAGATAAGATATGAAGTAAGGAAATTGAATGCAGAGAAAAGACCAAGAATGAAAGGTCGTTTTGTTAAAAGAACAACATGTTTTGCTGGAGGAGCAACTTCATTTCCAACTAATTATCACTGA 1284 0.412 MITDMKSGGADAGALGAKTARACDSCMRRRARWFCAADDAFLCHGCDNLVHSANQLASRHERVRLQTASGKVATTTATAKAWHSGFTRKARTPRHNKNSSIQQQQQRLKEKVLFNTSFLPLVPELGGEEEEEERERELLVDINEIAGEEEEEQLLCRVPVFDVGPFDLENCNVKNDAADFEDMCDLDSFCEFDVDLAEFAANVESLLGVGSSEIHENSSEQVFDYKQENEMDPSKNEVLKVKDEELDDLESVFDMTSDEVFHWNIDHDESMGHQEKEFMPLSINSSVGVSESVITKEETKRERFLRLNYEDVISAWTRQGSPSPWTTGNPPKFNSEDDSWQNFLGSSGVEGEIRTLRGNLIGSNGDGGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRTTCFAGGATSFPTNYH 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06390 427 ProSiteProfiles CCT domain profile. 369 411 IPR010402 GO:0005515
Vivi5g06390 427 ProSiteProfiles Zinc finger B-box type profile. 18 65 IPR000315 GO:0008270
Vivi5g06390 427 SMART bboxneu5 18 65 IPR000315 GO:0008270
Vivi5g06390 427 Pfam B-box zinc finger 20 63 IPR000315 GO:0008270
Vivi5g06390 427 CDD Bbox1_BBX-like 22 65 - -
Vivi5g06390 427 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 12 414 - -
Vivi5g06390 427 Pfam CCT motif 369 411 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06390 Vivi-Chr5 170493316 170495601 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06390 12 411 C2C2-CO-like Transcription Factor Family AT1G25440 42.661 3.45e-85 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Vivi5g06390 zf-B_box 1.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06390 - - adu:107478728 407.142