Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06388 ATGGAGAAATGGAAGAACTCAACCAACGAAAAAGAAAATGTAGAAGTAACGGTCAAAAAACAAAATCATTCAACAACTCAAATTACACACATCAAATCTCAAGAAGTTGAGATTATTGACGGGGTGAAGCTTTATCTCAAAGATGGTGAACAGAAATTAACTTCTACAAGTAAATATAAAGGTGTTCGACTTAGATGGAGAAGATACTCTGCTGAGATTCGAGATCCATTTGCAAAGAAAAGAATATGGCTAGGTACTTTTGATACTGAAATACAAGCTGCTACGGCTTATAGTCGAAAGATGGATGAGTATGAAGAAAGAAAGCTAGTTGAAATTACATTGTTGGATGATTTTACTATTAGTCTATCATGCAAGGAAGAGGGGGAATCGTGTCATAACTATGACGATCCATCTAATGATGATGACAACGACAACATTGGTGGTGGTGGTGGTTTAAATATGATGCACTTAGGTGCTCATGATATGTCAGAGATTCGACCTTAG 504 0.3631 MEKWKNSTNEKENVEVTVKKQNHSTTQITHIKSQEVEIIDGVKLYLKDGEQKLTSTSKYKGVRLRWRRYSAEIRDPFAKKRIWLGTFDTEIQAATAYSRKMDEYEERKLVEITLLDDFTISLSCKEEGESCHNYDDPSNDDDNDNIGGGGGLNMMHLGAHDMSEIRP 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06388 167 CDD AP2 57 101 IPR001471 GO:0003700|GO:0006355
Vivi5g06388 167 PIRSF PTI6 4 155 IPR017392 GO:0003700
Vivi5g06388 167 MobiDBLite consensus disorder prediction 129 152 - -
Vivi5g06388 167 Pfam AP2 domain 57 104 IPR001471 GO:0003700|GO:0006355
Vivi5g06388 167 SUPERFAMILY DNA-binding domain 57 104 IPR016177 GO:0003677
Vivi5g06388 167 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 20 100 - -
Vivi5g06388 167 SMART rav1_2 58 106 IPR001471 GO:0003700|GO:0006355
Vivi5g06388 167 MobiDBLite consensus disorder prediction 1 18 - -
Vivi5g06388 167 ProSiteProfiles AP2/ERF domain profile. 58 119 IPR001471 GO:0003700|GO:0006355
Vivi5g06388 167 MobiDBLite consensus disorder prediction 1 23 - -
Vivi5g06388 167 Gene3D AP2/ERF domain 57 110 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06388 Vivi-Chr5 170467969 170468472 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06388 58 108 AP2-EREBP Transcription Factor Family AT1G28370 57.692 3.57e-14 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi5g06388 AP2 5.4e-06 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06388 - - vvo:131606010 301.982