Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06387 ATGAAAAAAATTGAGATTATTGACGGAGTAAAGCTATATCTCAAAGATGGTGAACAAAAATTGACTTCTACAAGTAAGTATAAAGGTGTTCGACTTAGATGGAGAAGATTCTCGGCTGAAATTCAAGATCCACTTGCAAAAAAAAGAATATGGCTAGGTACTTTTGATACTGAAATACAAGCTGCAATGGCTTATAGTCAAAAGATGGACGAGTATGAAGAAAGGAAATTAGCTGAAAATACACCGTTGGATGACTTTATTATTAGTCCATCATGCAATGAAGGGGGAGAATCATGTAATGACTATGATGATCTATCTGATGATGATGACGACAACGACATTGGTGGTGGTGGTTCAAATCAGATGCAGTTGGGTACTCATGATATGTTAGAGATTCAACCTTAA 405 0.358 MKKIEIIDGVKLYLKDGEQKLTSTSKYKGVRLRWRRFSAEIQDPLAKKRIWLGTFDTEIQAAMAYSQKMDEYEERKLAENTPLDDFIISPSCNEGGESCNDYDDLSDDDDDNDIGGGGSNQMQLGTHDMLEIQP 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06387 134 Gene3D AP2/ERF domain 25 83 IPR036955 GO:0003700|GO:0006355
Vivi5g06387 134 MobiDBLite consensus disorder prediction 87 134 - -
Vivi5g06387 134 ProSiteProfiles AP2/ERF domain profile. 26 82 IPR001471 GO:0003700|GO:0006355
Vivi5g06387 134 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 23 100 - -
Vivi5g06387 134 CDD AP2 25 65 IPR001471 GO:0003700|GO:0006355
Vivi5g06387 134 SUPERFAMILY DNA-binding domain 25 76 IPR016177 GO:0003677
Vivi5g06387 134 Pfam AP2 domain 25 73 IPR001471 GO:0003700|GO:0006355
Vivi5g06387 134 SMART rav1_2 26 74 IPR001471 GO:0003700|GO:0006355
Vivi5g06387 134 MobiDBLite consensus disorder prediction 100 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06387 Vivi-Chr5 170456056 170456460 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06387 22 90 AP2-EREBP Transcription Factor Family AT1G12980 45.714 2.76e-14 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi5g06387 AP2 2.6e-06 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06387 - K09286 vvo:131606010 195.282