Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06366 ATGGATTTAGAAGAAAAGTTCCTTGCCAAAGTTTCTGGTGTTCAAAGCCTTTCTTCCAGTGTGCAAAGTACTCCAGAAAAGAATGGCCATTCAGATGATGCTTCAAGAAGTTCAGAACTCCTTCAGGAATTCATGAAACATGGTCCAAAAAAGGAACTTCTTCAAACGTGCTTTGATAAGGACAAAAAGAACACATCTTCAAAAAACAGGATGACTGAAGGAAAGTCATCCGGTAAGGTTATTAAGAAACAAGACACAAAAAAGGTTTCTAGTCTTAGTCGCCAGTCTTCAAAAAAACAACCTCGGAAGGGTGAGAACCCCATTCGACTCATACCTCCTCCTGGCCAGGATTCTGATTTAGGACATCCGAGCACTTGGATCTGTAAAAATGCTGCTTGTAGGGCAGTTCTATCAATGGATGACACTTTTTGTAGGCGATGTTCTTGTTGTATCTGTCATCTTTTTGATGATAACAAGGATCCTAGTCTTTGGTTAGTATGCACATCTGAATCTACTCTAGGGGACTCCTGTGGATTGTCTTGCCATATCGAATGTGCCCTTCAACATGAAAAAGTGGGAGTTGTTGATCACGGGCAACTGATGCAACTGGATGGTGGCTATTGCTGTGCGTCCTGTGGTAAAGTTACTGGGATACTTGGATGCTGGAAGAAACAGCTAAATATTGCAAAAGATGTCCGGCGTGTAGATGTACTCTGTTATAGGATATATTTGTGCTACAGACTTCTGAATGGAACTTCAAAATTCAAAGACCTGCATCTAATGGTTCAGGAGGCTAAGGCTAAACTGGAGACAGAAGTTGGTCCTCTTGACGGAGTTTCTGCCAAAATGGCACGAGGCATCGTCAGCAGACTCCCTATTGCCAGTGATGTGCAGAGTCTCTGCACTCTTGCTATTGAGAAAGCTGATAGCTGGCTGGCCACTGTTCCCAATTTAAATCCAGGTTCCAAAGAGGGTTCACTTCCTGCTGCTTGCAAGTTTGTTTTTGAAGAGGTAACAACTTCCTCTGTCAAAATCATTTTGATTGAAATGTCAAGTATATGTTCCGAGGACATTAAGGGGTACAAGCTCTGGTATTACAAAAGTCGGGATGAGCCACACACAAAGGATCCTGTTTCTGTGTTTCCCAAATCTCAGAGGAGGATTTTGATATCCGACCTTCAACCTTGCACGGAATATACTTTTAGAATTGTATCTTACACTGACATGGGTGACCTGGGTCATTCCGAGGCTAAATGCTTCACTAAGAGCATTGAGATAGTTCAACATAAAATCTCTAAGTTTGTTGCTTCGAATCATAAAAAACTGAACTCTCAAGCCGGGGGTGATTTTTCTGCAATCACAGGCCCCAGATTTAAGGTTCAAGACCTTGGGAAAATTTTGCGTCTTGCTTGGGCTCAAGAACGTGGTTACTTTGAGGAGTGTTGCTCTGCTGATATGAAAAATTGCTGCGGACAAGGTGAAATGGACAAGCCTAAAATTTCAGAAACGTGGTTTCCTTCAGATTCGCGAGGCCTTGATTTAAATGTTGTTTCAGTCCCTGATTTGAATGAAGACCTAACACCTCCTTTTGAGTCTTCCAGGGATGAAGGTATTGGTTGCACTTTACTGCACGCTGTAGAGGCAGTTGATGATGCTGCTTCTCATGACCTACAGAAAAATGATTTAGCAAGATCACATAGGAGTTGCGACTCACAAACCTGGGCTCATGGCCCAAGAGAAGTCTCAGCTGTTGATTCTCGTGTATATGCTGGCAGGAAAAGGGCTGCGAGATCAAATGAAGAAGGACATGACTGCGACAGCACTTTAATAAATGGTTCTCCTTTACGTATGCCGGATGGTTCACGTTCCTTGGATGAAAACTTTGAGTATTGTGTGAAAGTAATCCGTTGGCTAGAGTGTGAGGGTCACATCAAACAGGAGTTTAGGTTAAAATTGCTAACATGGTTTAGTTTGAGATCAACAGAGCAGGAACGCAGGGTGGTAAATACCTACATTCAAACTCTGATGGACGATCCAAGTAGTTTGGCAGGGCAACTGGTTGACTCTTTCTCTGATATTGTATCCAACAAGAGGCCAAGAAATGGATTCAGTAGTAAAGCTGGGGCATCAAAATAA 2136 0.426 MDLEEKFLAKVSGVQSLSSSVQSTPEKNGHSDDASRSSELLQEFMKHGPKKELLQTCFDKDKKNTSSKNRMTEGKSSGKVIKKQDTKKVSSLSRQSSKKQPRKGENPIRLIPPPGQDSDLGHPSTWICKNAACRAVLSMDDTFCRRCSCCICHLFDDNKDPSLWLVCTSESTLGDSCGLSCHIECALQHEKVGVVDHGQLMQLDGGYCCASCGKVTGILGCWKKQLNIAKDVRRVDVLCYRIYLCYRLLNGTSKFKDLHLMVQEAKAKLETEVGPLDGVSAKMARGIVSRLPIASDVQSLCTLAIEKADSWLATVPNLNPGSKEGSLPAACKFVFEEVTTSSVKIILIEMSSICSEDIKGYKLWYYKSRDEPHTKDPVSVFPKSQRRILISDLQPCTEYTFRIVSYTDMGDLGHSEAKCFTKSIEIVQHKISKFVASNHKKLNSQAGGDFSAITGPRFKVQDLGKILRLAWAQERGYFEECCSADMKNCCGQGEMDKPKISETWFPSDSRGLDLNVVSVPDLNEDLTPPFESSRDEGIGCTLLHAVEAVDDAASHDLQKNDLARSHRSCDSQTWAHGPREVSAVDSRVYAGRKRAARSNEEGHDCDSTLINGSPLRMPDGSRSLDENFEYCVKVIRWLECEGHIKQEFRLKLLTWFSLRSTEQERRVVNTYIQTLMDDPSSLAGQLVDSFSDIVSNKRPRNGFSSKAGASK 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06366 711 ProSiteProfiles Fibronectin type-III domain profile. 327 426 IPR003961 GO:0005515
Vivi5g06366 711 MobiDBLite consensus disorder prediction 1 118 - -
Vivi5g06366 711 PANTHER VIN3-LIKE PROTEIN 2-RELATED 17 706 IPR044514 GO:0010048|GO:0040029
Vivi5g06366 711 Pfam PHD - plant homeodomain finger protein 128 246 IPR032881 -
Vivi5g06366 711 SUPERFAMILY Fibronectin type III 333 411 IPR036116 GO:0005515
Vivi5g06366 711 CDD FN3 332 411 IPR003961 GO:0005515
Vivi5g06366 711 Gene3D Immunoglobulins 328 424 IPR013783 -
Vivi5g06366 711 MobiDBLite consensus disorder prediction 12 28 - -
Vivi5g06366 711 Pfam Fibronectin type III domain 333 413 IPR003961 GO:0005515
Vivi5g06366 711 CDD PHD_VIN3_plant 148 212 - -
Vivi5g06366 711 MobiDBLite consensus disorder prediction 29 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06366 Vivi-Chr5 170222348 170229052 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06366 86 702 PHD Gene Family AT3G24440 47.771 2.91e-179 523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06366 - - tpra:123915437 1238.02