Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06365 ATGGATTTAGAAGAAAAGTTCCTTGCCAAAGTTTCTGGTGTTCAAAGCCTTTCTTCCAGTGTGCAAAGTACTCCAGAAAAGAATGGCCATTCAGATGATGCTTCAAGAAGTTCAGAACTCCTTCAGGAATTCATGAAACATGGTCCAAAAAAGGAACTTCTTCAAACGTGCTTTGATAAGGACAAAAAGAACACATCTTCAAAAAACAGGATGACTGAAGGAAAGTCATCCGGTAAGGTTATTAAGAAACAAGACACAAAAAAGGTTTCTAGTCTTAGTCGCCAGTCTTCAAAAAAACAACCTCGGAAGGGTGAGAACCCCATTCGACTCATACCTCCTCCTGGCCAGGATTCTGATTTAGGACATCCGAGCACTTGGATCTGTAAAAATGCTGCTTGTAGGGCAGTTCTATCAATGGATGACACTTTTTGTAGGCGATGTTCTTGTTGTATCTGTCATCTTTTTGATGATAACAAGGATCCTAGTCTTTGGTTAGTATGCACATCTGAATCTACTCTAGGGGACTCCTGTGGATTGTCTTGCCATATCGAATGTGCCCTTCAACATGAAAAAGTGGGAGTTGTTGATCACGGGCAACTGATGCAACTGGATGGTGGCTATTGCTGTGCGTCCTGTGGTAAAGTTACTGGGATACTTGGATGCTGGAAGAAACAGCTAAATATTGCAAAAGATGTCCGGCGTGTAGATGTACTCTGTTATAGGATATATTTGTGCTACAGACTTCTGAATGGAACTTCAAAATTCAAAGACCTGCATCTAATGGTTCAGGAGGCTAAGGCTAAACTGGAGACAGAAGTTGGTCCTCTTGACGGAGTTTCTGCCAAAATGGCACGAGGCATCGTCAGCAGACTCCCTATTGCCAGTGATGTGCAGAGTCTCTGCACTCTTGCTATTGAGAAAGCTGATAGCTGGCTGGCCACTGTTCCCAATTTAAATCCAGAGGGTTCACTTCCTGCTGCTTGCAAGTTTGTTTTTGAAGAGGTAACAACTTCCTCTGTCAAAATCATTTTGATTGAAATGTCAAGTATATGTTCCGAGGACATTAAGGGGTACAAGCTCTGGTATTACAAAAGTCGGGATGAGCCACACACAAAGGATCCTGTTTCTGTGTTTCCCAAATCTCAGAGGAGGATTTTGATATCCGACCTTCAACCTTGCACGGAATATACTTTTAGAATTGTATCTTACACTGACATGGGTGACCTGGGTCATTCCGAGGCTAAATGCTTCACTAAGAGCATTGAGATAGTTCAACATAAAATCTCTAAGTTTGTTGCTTCGAATCATAAAAAACTGAACTCTCAAGCCGGGGGTGATTTTTCTGCAATCACAGGCCCCAGATTTAAGGTTCAAGACCTTGGGAAAATTTTGCGTCTTGCTTGGGCTCAAGAACGTGGTTACTTTGAGGAGTGTTGCTCTGCTGATATGAAAAATTGCTGCGGACAAGGTGAAATGGACAAGCCTAAAATTTCAGAAACGTGGTTTCCTTCAGATTCGCGAGGCCTTGATTTAAATGTTGTTTCAGTCCCTGATTTGAATGAAGACCTAACACCTCCTTTTGAGTCTTCCAGGGATGAAGGTATTGGTTGCACTTTACTGCACGCTGTAGAGGCAGTTGATGATGCTGCTTCTCATGACCTACAGAAAAATGATTTAGCAAGATCACATAGGAGTTGCGACTCACAAACCTGGGCTCATGGCCCAAGAGAAGTCTCAGCTGTTGATTCTCGTGTATATGCTGGCAGGAAAAGGGCTGCGAGATCAAATGAAGAAGGACATGACTGCGACAGCACTTTAATAAATGGTTCTCCTTTACGTATGCCGGATGGTTCACGTTCCTTGGATGAAAACTTTGAGTATTGTGTGAAAGTAATCCGTTGGCTAGAGTGTGAGGGTCACATCAAACAGGAGTTTAGGTTAAAATTGCTAACATGGTTTAGTTTGAGATCAACAGAGCAGGAACGCAGGGTGGTAAATACCTACATTCAAACTCTGATGGACGATCCAAGTAGTTTGGCAGGGCAACTGGTTGACTCTTTCTCTGATATTGTATCCAACAAGAGGCCAAGAAATGGATTCAGTAGTAAAGCTGGGGCATCAAAATAA 2127 0.426 MDLEEKFLAKVSGVQSLSSSVQSTPEKNGHSDDASRSSELLQEFMKHGPKKELLQTCFDKDKKNTSSKNRMTEGKSSGKVIKKQDTKKVSSLSRQSSKKQPRKGENPIRLIPPPGQDSDLGHPSTWICKNAACRAVLSMDDTFCRRCSCCICHLFDDNKDPSLWLVCTSESTLGDSCGLSCHIECALQHEKVGVVDHGQLMQLDGGYCCASCGKVTGILGCWKKQLNIAKDVRRVDVLCYRIYLCYRLLNGTSKFKDLHLMVQEAKAKLETEVGPLDGVSAKMARGIVSRLPIASDVQSLCTLAIEKADSWLATVPNLNPEGSLPAACKFVFEEVTTSSVKIILIEMSSICSEDIKGYKLWYYKSRDEPHTKDPVSVFPKSQRRILISDLQPCTEYTFRIVSYTDMGDLGHSEAKCFTKSIEIVQHKISKFVASNHKKLNSQAGGDFSAITGPRFKVQDLGKILRLAWAQERGYFEECCSADMKNCCGQGEMDKPKISETWFPSDSRGLDLNVVSVPDLNEDLTPPFESSRDEGIGCTLLHAVEAVDDAASHDLQKNDLARSHRSCDSQTWAHGPREVSAVDSRVYAGRKRAARSNEEGHDCDSTLINGSPLRMPDGSRSLDENFEYCVKVIRWLECEGHIKQEFRLKLLTWFSLRSTEQERRVVNTYIQTLMDDPSSLAGQLVDSFSDIVSNKRPRNGFSSKAGASK 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06365 708 ProSiteProfiles Fibronectin type-III domain profile. 324 423 IPR003961 GO:0005515
Vivi5g06365 708 CDD FN3 329 408 IPR003961 GO:0005515
Vivi5g06365 708 Gene3D Immunoglobulins 317 421 IPR013783 -
Vivi5g06365 708 MobiDBLite consensus disorder prediction 1 118 - -
Vivi5g06365 708 Pfam PHD - plant homeodomain finger protein 128 246 IPR032881 -
Vivi5g06365 708 SUPERFAMILY Fibronectin type III 330 408 IPR036116 GO:0005515
Vivi5g06365 708 Pfam Fibronectin type III domain 330 410 IPR003961 GO:0005515
Vivi5g06365 708 PANTHER VIN3-LIKE PROTEIN 2-RELATED 17 703 IPR044514 GO:0010048|GO:0040029
Vivi5g06365 708 MobiDBLite consensus disorder prediction 12 28 - -
Vivi5g06365 708 CDD PHD_VIN3_plant 148 212 - -
Vivi5g06365 708 MobiDBLite consensus disorder prediction 29 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06365 Vivi-Chr5 170222346 170229052 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06365 86 699 PHD Gene Family AT3G24440 48.000 9.74e-180 524
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06365 - - tpra:123915437 1243.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g06365 5 170222346 170229052 Vivi5g06365 5 170222346 170229052 ECH