Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06362 ATGACAAGTCGATTCAAGGAAGATGAGAAAAACGAAAAAATTATTCGAGGTCTCCTCAAACTTACACCGAATCGAAGATGCATTAATTGCAACAGCTTGGGACCTCAATATGTATGCACAAATTTCTGGACGTTTGTTTGCACAAGCTGTAGTGGAATACACCGTGAATTTACTCATAGAGTAAAATCAGTTTCCATGGCTAAATTTACTGCACAAGAAGTTAGTGCACTTCAAGAAGGAGGAAATCAGCATGCAAAAGAAATATTTTTTAAAGAATGGGATCCACAAACTCATTCTTTACCAGATAGCAATAATGTTGACAGGCTTCGGAATTTTATCAAGCATGTTTATGTAGATAAAAGATTCACTGGCGAGAGGTCCTATGACAAACCTCCAAGATCACAGGGCGACAAAGATGATTCCTATGAAAACAGGAGAATGGAGACATATCAGGGAGGACATAAAAGTCCTCCTTACGAGGACACATATGAACGTCGTTACAGTGACAGGTCTAGTCCGGGTGGAAGAAGTCCTGGCTATGATCAAGAAAGGCATTATGCCAATGATAAAAGAAGTCCTGGTCGCCCTCCAATAGTCAACGACTGGCGCCGTGAAGATAGATTTGGAGATGGAAGGAAATTTGAAGATAGTAGAATATCCGATGGAGGTAATAAGATTGAAAGCCAATCTCCTGAGCGAGCCAAAGACCTGGGTTCTTCAAGCCCACTACCTGTTGTCCGACCTGTTAGAGAAATTTTGGGAGAAAATGTAGTACCTCTGCGAATTAGTGAACCTCCCAAAGCAAACAGTGGACAGGCTGCTAATGGCTCAGGACTCACACAGAGAACGGCGTCTTCCAGTAGCTTGGCATCCAGTAATGGAACCCAAACAGAGGTTAAGCTTGAGACTATCAGGAGCCTTATTGATTTTGATGATATTCCTGAACCACCTATTGCTCCAGCAATTCCTCAAGCCACACCAACTACCGTTGCTCAACTTGCGAATCCAACAGATTCTGGTGATAGCAATTGGGCCTCCTTTGATGTTGCACCTGTGGTAAAATCATCTCAGGGTCTTTCAAATGTAAATCCGCTTGAATCTATGCTGTCCCAGTTGTCTGTTCCATCATCCTTACCTGCTCACGTTTCCGGAGCCCAAGGGCCTTTGGCAGGATCAGCTCCAGCTGCGAGCAGCTTCACAACCTTCCCAGCCAATGTTGCTTCATTAACATCTTCTGGATTGACAACGGCATCACCTTTCAATAATGCAGGCCCGTGGCATAGTTTGCAGTATCAGCAACCGCAACCGCAACCGCTGTTCACATCTGCTGTTGGTCAGCCTACTATTCAACAATCTACCCCACCAATTAATGGAGCTTTGAATTATCAGGGGCATCCAAGCACCCTAGTGCCACATGTGTCAAAGGTTGTCAATGAGGGAAACTATAGTGTTGCTTCACAACCTTCTATTGTAGACCAAAAACCAAGTGGAAGAAATGAACTTCCTGAGGATCTATTCACTGTAAAATATTCCCCCTTCCCTGCTCCAGTCCCAGGCTGGCAAATGGGTGCACCACCTGGCATGGGTGTCCCAGTTCAATATAATAATGTGATGTCCATACCGAGTTTCCCACAACCATCAAAATCTACAAATCCATTTGATGTGATCAATCAACCAACTCCCGTTCCGGTTGAAGCCCCAACTTTTCCTTCTATGTCATCTTTGCAAGGTGCTCTGCCTAGTGTAACACCTTCAGCTACAGTGCACCCTTCAAACATGGTTAATCAATCTCTTGCCTGGAATCCTCCATCCTCACTATCATATGCACCAATGCCGCCTCCACAAGCACATACTTTTGCCTCGGCAATGAGACCGAGGGCATACACGGAACAACAAATGGCCCCTAACTTGACAATGCCAAGCCATCAAGGAATTGGGACTTTTGGTACTGAGGGAGCTGCTTTTGGATTCTCTAATATAGATCAGCAGCTGAATGGTAGGTTGCCAGCCTCTGCTACATTAAATCCCTTCCCTGCAGGAGGGGGTAATCCTTTTGGATGA 2061 0.4478 MTSRFKEDEKNEKIIRGLLKLTPNRRCINCNSLGPQYVCTNFWTFVCTSCSGIHREFTHRVKSVSMAKFTAQEVSALQEGGNQHAKEIFFKEWDPQTHSLPDSNNVDRLRNFIKHVYVDKRFTGERSYDKPPRSQGDKDDSYENRRMETYQGGHKSPPYEDTYERRYSDRSSPGGRSPGYDQERHYANDKRSPGRPPIVNDWRREDRFGDGRKFEDSRISDGGNKIESQSPERAKDLGSSSPLPVVRPVREILGENVVPLRISEPPKANSGQAANGSGLTQRTASSSSLASSNGTQTEVKLETIRSLIDFDDIPEPPIAPAIPQATPTTVAQLANPTDSGDSNWASFDVAPVVKSSQGLSNVNPLESMLSQLSVPSSLPAHVSGAQGPLAGSAPAASSFTTFPANVASLTSSGLTTASPFNNAGPWHSLQYQQPQPQPLFTSAVGQPTIQQSTPPINGALNYQGHPSTLVPHVSKVVNEGNYSVASQPSIVDQKPSGRNELPEDLFTVKYSPFPAPVPGWQMGAPPGMGVPVQYNNVMSIPSFPQPSKSTNPFDVINQPTPVPVEAPTFPSMSSLQGALPSVTPSATVHPSNMVNQSLAWNPPSSLSYAPMPPPQAHTFASAMRPRAYTEQQMAPNLTMPSHQGIGTFGTEGAAFGFSNIDQQLNGRLPASATLNPFPAGGGNPFG 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06362 686 FunFam Arf-GAP domain and FG repeat-containing protein 1 1 135 - -
Vivi5g06362 686 Gene3D Arf GTPase activating protein 2 131 IPR038508 -
Vivi5g06362 686 MobiDBLite consensus disorder prediction 262 298 - -
Vivi5g06362 686 Pfam Putative GTPase activating protein for Arf 13 124 IPR001164 GO:0005096
Vivi5g06362 686 SMART arf_gap_3 12 130 IPR001164 GO:0005096
Vivi5g06362 686 MobiDBLite consensus disorder prediction 268 298 - -
Vivi5g06362 686 PRINTS HIV Rev interacting protein signature 43 60 IPR001164 GO:0005096
Vivi5g06362 686 PRINTS HIV Rev interacting protein signature 24 43 IPR001164 GO:0005096
Vivi5g06362 686 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
Vivi5g06362 686 MobiDBLite consensus disorder prediction 124 243 - -
Vivi5g06362 686 MobiDBLite consensus disorder prediction 124 150 - -
Vivi5g06362 686 CDD ArfGap_AGFG 12 122 - -
Vivi5g06362 686 SUPERFAMILY ArfGap/RecO-like zinc finger 11 123 IPR037278 -
Vivi5g06362 686 ProSiteProfiles ARF GTPase-activating proteins domain profile. 12 130 IPR001164 GO:0005096
Vivi5g06362 686 PANTHER ARFGAP/RECO-RELATED 1 686 IPR044820 GO:0005096
Vivi5g06362 686 MobiDBLite consensus disorder prediction 182 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06362 Vivi-Chr5 170172271 170179767 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06362 15 122 C2H2 Transcription Factor Family AT4G05330 35.965 1.29e-11 64.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g06362 5 170172271 170179767 Vivi5g06362 5 170172271 170179767 ECH