LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi5g06361	ATGGCTGATTCAGGTTCAGTTTCTACAAAGAGAATGTGGTGTTCAATTCCTGAAAAGTTTCAGCTGCATGCAGCCATGTTGGCTTTACAATTTGGTTACGCTGGTTTTCATGTTGTCTCAAGAGCTGCTCTTAATATGGGAATTAGCAAATATGTTTTTCCTGTCTATAGGAACATTATTGCTCTTCTTTTACTTCTTCCCTTTGCATATTTCTTCGAAAAGAAGAACAGACCACCGATTAATTTCAACTTTCTCTGCCAATTCTTTTTTCTAGCACTTGTTGGGATTACAGCAAACCAGGGTTTTTACTTGCTTGGTTTGGAGAACACAAGTCCAACCTTTGCATCAGCAGTACAAAACTCTATCCCTGCCATAACATTTCTCATGGCAGTAATTCTAAGGATAGAACAAGTGAAACTTAACAGAAAAGATGGATTGGCAAAAGTAGCAGGAACAATATGCTGTGTAATTGGTGCAACAATAATTACATTATACAAAGGTCCAGCAATATATACTCCAAGTAATCACTTAAATAACACTTCAACAATGATAAATGAAGTAACAACAACAACACCAATGATTGATTTTTGGAAAATGTCACTTGGTGATGCTAAGGGAAAAAACTGGATACTTGGTTGTGTTTATCTTTTTGGACATTGTTTATCTTGGTCTGCTTGGCTTGTGTTTCAAACACCTATCCTTAAGAAGTATCCAGCTCGTCTTTCTGTCACTTCTTTTACATGTTTCTTTGGTCTCTTGCAATTTCTTGTTATTGCTTTGGTTTGCGAAAGAAATGCTCAAGCTTGGTTATTTACCTCAAGAGGCGAAATTTTCACTATTTTATATGTCGGAGTGGTGGCATCTGGAATTGCATTTGCAGTACAAATTTGGTGTATTGATAAACAAGGTCCTGTATTTGTTGCTGTGTATCAACCTGTTCAAACTTTTGTTGTTGCTTTCATGGCTTCTATTACTTTAGGAGAAGAGTTCTACTTGGGAGGGATCATTGGAGCAATATTGATAGTTGTTGGACTATACTTTGTTTTGTGGGGTAAAAGTGAAGAGAATAAATTTGCAAAGGAACAACTTGCAATTGGATCATCCACTACAGAACATAGCAACATTAGGTCCACAAGTGATGCTAAAGAACCACCACTTAATGAACCACTTCTCTCTTCATCATCGGAAAATGTTGGAATTAAGATATTAAATTAA	1215	0.363	MADSGSVSTKRMWCSIPEKFQLHAAMLALQFGYAGFHVVSRAALNMGISKYVFPVYRNIIALLLLLPFAYFFEKKNRPPINFNFLCQFFFLALVGITANQGFYLLGLENTSPTFASAVQNSIPAITFLMAVILRIEQVKLNRKDGLAKVAGTICCVIGATIITLYKGPAIYTPSNHLNNTSTMINEVTTTTPMIDFWKMSLGDAKGKNWILGCVYLFGHCLSWSAWLVFQTPILKKYPARLSVTSFTCFFGLLQFLVIALVCERNAQAWLFTSRGEIFTILYVGVVASGIAFAVQIWCIDKQGPVFVAVYQPVQTFVVAFMASITLGEEFYLGGIIGAILIVVGLYFVLWGKSEENKFAKEQLAIGSSTTEHSNIRSTSDAKEPPLNEPLLSSSSENVGIKILN	404

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi5g06361	404	SUPERFAMILY	Multidrug resistance efflux transporter EmrE	256	353	-	-
	Vivi5g06361	404	Pfam	EamA-like transporter family	211	349	IPR000620	GO:0016020
	Vivi5g06361	404	Pfam	EamA-like transporter family	26	163	IPR000620	GO:0016020
	Vivi5g06361	404	SUPERFAMILY	Multidrug resistance efflux transporter EmrE	56	166	-	-
	Vivi5g06361	404	PANTHER	WAT1-RELATED PROTEIN	24	362	IPR030184	GO:0016020\|GO:0022857
	Vivi5g06361	404	MobiDBLite	consensus disorder prediction	370	393	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi5g06361	Vivi-Chr5	170123793	170126318	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi5g06361	1	398	Nodulin-like Gene Family	AT1G75500	67.250	0.0	550

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi5g06361	-		-	vvo:131608193	785.793