Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06352 ATGAGTATTGACCATGCCAATGGCACAGCACCCTCCATCACCAACGTTCCTACCATCAAGTTCACCAAACTATTCATCAATGGAGATTTCGTTGAATCAGTTTCAGGGAAGAGTTTTGAGACAATAGATCCAAGAACAGGAGATGTTATAGCAAGAATAAGTGAAGGAACCAAAGAAGACATTGATGTTGCTGTAAAGGCAGCTCGTCACGCATTTGACTCAGGTCCATGGCCTCGTCTGCCCGGCACTGAAAGAGCAAAAATAATGATGAAATTTGCGAACCTAATTGAAGAAAACATAGAAGAGCTAGCAGCACTAGAAGCCATTGATGCAGGAAAGTTGTACCATCTCTGTAAGGTTTTAGACATTCCCGCTGCAGCAAATACACTACGTTACTATGCCGGTGCAGCTGATAAAATTCATGGAAATGTATTAAAAGCTTCTGGACAGTTCCATGCTTATACATTGATGGAACCAATTGGTGTTGTTGGACACATTATTCCCTGGAACTTTCCTACTTCAATGTTCTTTGTCAAGGTTAGCCCTTGTTTAGCTGCTGGATGCACTATGGTCCTTAAACCTGCTGAACAGACACCTCTTTCTGCTTTGTTTTATGCTCATCTAGCCAAATTGGCTGGAATACCGGATGGAGTGTTGAATGTAGTACCCGAATTTGGAGCTATTGCTGGTGCTGCAATTAGTTCACACATGGATATTGATGCGGTCAGCTTTACTGGTTCAACACAAACCGGGCGAAAGATAATGGAAGCTGCAGCAAAGAGTAACTTGAAACAAGTTTCACTTGAATTAGGAGGCAAGTCGCCGCTCATAATTTTCGATGATGCTGATATTGAAAAAGCTACTGAACTTGCTCTTATAGGCATCTTATTCAACAAGGGAGAAGTGTGTGTTGCAAGTTCACGCGTGTTTGTTCAAGAAGGAATCTATGAAGAATTCGAGAAAAAATTGGTAGAAAAAGCAAAAGCTTGGATCGTCGGGGACAATTTCGATCCTAAAGTTCAACAAGGACCTCAAGTTGACAAGAAACAATTTGAAAAAATTCTTTCATATATAGAACATGGAAAAAGAGAAGGAGCTACCCTTTTGACTGGTGGTAAAACAATTGGAAGTAAAGGATACTACATTGAGCCAACAATTTTCTCTAATATAAAGGATGACATGCTTATAGCACAAGATGAAATATTTGGTCCTGTGTTGGCACTGAAAAAGTTTAAGACTATTGAGGAAGCAATTAAGAGTGCTAATAATACAAGATATGGTTTAGCAGCAGGTATTGTGACAAAGAATTTGGATATAGCAAACACTGTGTCAAGATCCATTCGAGCAGGCACTATTTGGATAAACTGTTATTTTGCTTTTGGAGATGATATTCCATTTGGAGGATATAAAATGAGTGGATTTGGAAGAGAATATGGATTGGAAGCCATTCACAAGTATCTACAAGTTAAATCTGTTGTTACTCCCATTTATAATTCTCCATGGCTCTGA 1509 0.3936 MSIDHANGTAPSITNVPTIKFTKLFINGDFVESVSGKSFETIDPRTGDVIARISEGTKEDIDVAVKAARHAFDSGPWPRLPGTERAKIMMKFANLIEENIEELAALEAIDAGKLYHLCKVLDIPAAANTLRYYAGAADKIHGNVLKASGQFHAYTLMEPIGVVGHIIPWNFPTSMFFVKVSPCLAAGCTMVLKPAEQTPLSALFYAHLAKLAGIPDGVLNVVPEFGAIAGAAISSHMDIDAVSFTGSTQTGRKIMEAAAKSNLKQVSLELGGKSPLIIFDDADIEKATELALIGILFNKGEVCVASSRVFVQEGIYEEFEKKLVEKAKAWIVGDNFDPKVQQGPQVDKKQFEKILSYIEHGKREGATLLTGGKTIGSKGYYIEPTIFSNIKDDMLIAQDEIFGPVLALKKFKTIEEAIKSANNTRYGLAAGIVTKNLDIANTVSRSIRAGTIWINCYFAFGDDIPFGGYKMSGFGREYGLEAIHKYLQVKSVVTPIYNSPWL 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06352 502 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 272 461 IPR016163 GO:0016620
Vivi5g06352 502 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 26 490 IPR016162 GO:0016491
Vivi5g06352 502 FunFam Aldehyde dehydrogenase3 272 461 - -
Vivi5g06352 502 Pfam Aldehyde dehydrogenase family 30 492 IPR015590 GO:0016491
Vivi5g06352 502 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 296 307 IPR016160 GO:0016491
Vivi5g06352 502 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 26 291 - -
Vivi5g06352 502 FunFam Aldehyde dehydrogenase, putative 464 490 - -
Vivi5g06352 502 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 15 492 - -
Vivi5g06352 502 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 268 275 IPR029510 GO:0016491
Vivi5g06352 502 SUPERFAMILY ALDH-like 16 498 IPR016161 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06352 Vivi-Chr5 170036997 170040878 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06352 7 502 Aldehyde Dehydrogenase Gene Family AT3G24503 69.739 0.0 728
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06352 K12355 - gmx:100811540 867.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g06352 5 170036997 170040878 Vivi4g00125 4 2172065 2175154 PCT