Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06341 ATGTCATCATCATTCTCTATCTCTTCTTCACTACCATCACTTCAAAACCCTAACTTCGACCATGCTCCTCTCTTCAAATCCCTCAAATTACCCAATCTCCGTTTCAATTCTAGAATCTCTTCACCACCACGCTCTCGTCCCAACTTCCCCCAACTCTACAAAACCTCCACCACTCTCCGCCGTAGATTCCCATGCAATAAAGCCTTGAAAGATTCCGGTGATGGTAGTGGTGGTGGTGGCGGTGGAGATGGTGACCAGGAGGTTGAGAAGAAAAATGTGTCTTCCGGACTTTTTCCAGAGTGGTTGAATTTCACTAGTGATGATGCCAAAACGGTTTTTGCTGCTTTGGCGATTTCCCTTGCGTTTCGGACTTTCATTGCTGAGCCGAGGTTTATTCCTTCTTTGTCAATGTATCCTACTTATAATGTTGGAGATAGAATTGTTGCTGAAAAGGTTTCATACTATTTTAGAAAGCCGTGTGCAAATGATATTGTGATTTTCAAAAGTCCTCCAGTTCTTCAAGAAGTTGGATATACTGATGATGATGTTTTCATAAAACGTATTGTTGCAAAGGAAGGTGATATCGTAGAGGTTCGAAATGGACATGTTGTAGTTAATGGGATTGAGAGGGATGAGAAGTTTATAAAAGAAGCACCGAAGTATGAGATGAAACCCATACGTGTGCCAGAGAACTCCGTTTTTGTGATGGGAGACAACCGCAATAACAGCTACGACTCACATGTGTGGGGTCCCCTGCCGGCCAAGAATATCATAGGTAGATCAGTATTCCGATATTGGCCACCAAATAGAGTTGCCGTCACAGTTGCTAAGGGAGGGTGCCCTGTTGAAACAAAGCCAGAGACTACAAGTACTACTCTAGCATCTCAATGA 891 0.4332 MSSSFSISSSLPSLQNPNFDHAPLFKSLKLPNLRFNSRISSPPRSRPNFPQLYKTSTTLRRRFPCNKALKDSGDGSGGGGGGDGDQEVEKKNVSSGLFPEWLNFTSDDAKTVFAALAISLAFRTFIAEPRFIPSLSMYPTYNVGDRIVAEKVSYYFRKPCANDIVIFKSPPVLQEVGYTDDDVFIKRIVAKEGDIVEVRNGHVVVNGIERDEKFIKEAPKYEMKPIRVPENSVFVMGDNRNNSYDSHVWGPLPAKNIIGRSVFRYWPPNRVAVTVAKGGCPVETKPETTSTTLASQ 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06341 296 ProSitePatterns Signal peptidases I signature 3. 233 246 IPR019758 GO:0004252|GO:0016020
Vivi5g06341 296 MobiDBLite consensus disorder prediction 66 89 - -
Vivi5g06341 296 NCBIfam signal peptidase I 110 268 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vivi5g06341 296 PRINTS Bacterial leader peptidase 1 (S26A) family signature 184 196 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vivi5g06341 296 PRINTS Bacterial leader peptidase 1 (S26A) family signature 228 247 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vivi5g06341 296 PRINTS Bacterial leader peptidase 1 (S26A) family signature 125 141 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vivi5g06341 296 CDD S26_SPase_I 128 260 IPR019533 GO:0004252|GO:0006465
Vivi5g06341 296 FunFam Peptidase/ serine-type peptidase 134 265 - -
Vivi5g06341 296 SUPERFAMILY LexA/Signal peptidase 123 272 IPR036286 -
Vivi5g06341 296 Gene3D Umud Fragment, subunit A 122 278 - -
Vivi5g06341 296 PANTHER SIGNAL PEPTIDASE I 96 271 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vivi5g06341 296 Pfam Signal peptidase, peptidase S26 109 266 IPR019533 GO:0004252|GO:0006465
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06341 Vivi-Chr5 169873303 169876111 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06341 136 267 MADS-box Gene Family AT1G29960 31.818 2.13e-12 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06341 K03100 - qsa:O6P43_004025 363.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g06341 5 169873303 169876111 Vivi5g06341 5 169873303 169876111 ECH