Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06335 ATGGGGGAAGGTGAGGGGAGTGATATCCCTCCTAAAAACGTACCGTTTGATTCGAGTTCGAATTCGAATTCGAAGAAGCTTGCTAGGCAGCTCGATTTCAATGCTGTTGGTGGGACTCCGGTGACTGTGCCTTTGCCGGAACAACCGCAGCAACCTCCGGCGATACTTCCTCCAGCGACACTGCCTCCTCTTCCTTCAGCCAAATTGGGGAAACCAGAATCTCCAAAATCAAAATCAAGAGCCAGCTCTGAGACAAAAGATGCTACACCAAAGAAGCAAAAACAGTGCAATTGTAAACATTCAAAATGCTTAAAGCTATATTGTGAATGTTTTGCATCGGGAATATATTGTGATGGTTGCAACTGTGTAAATTGTTTTAACAATGTTGACAATGAAGCTGCTAGACGAGAAGCTGTTGAAGCAACTTTAGAACGCAATCCAAATGCTTTTAGGCCAAAAATTGCAAGCAGCCCTCATGGAACACGTGATAACAGGGAGGAGGCTGGGGAAGTTTTAATATTGGCAAAGCACAACAAAGGGTGCCATTGTAAAAAATCTGGGTGCCTCAAGAAGTACTGTGAATGTTTCCAAGCCAACATTCTTTGTTCTGAAAATTGTAAATGCATGGATTGCAAAAACTTTGAAGGAAGTGAAGAGCGACAAGCTTTATTCCATGGAGATCAAAACAATAATATGGCATTTATTCAGCAAGCAGCCAATGCTGCCATAACTGGAGCTATTGGTTCCTCAGGTTATTCATCACCACCAGTATCGAGAAAAAGAAAAGGTTCAGAACTCTGGCCATCCGTCAAGGATCCATCTGTTAGCAAGCTGGGACAACAGGCAAATCCTATCAGAGGTCCTGGAGCACCCTCCTCATCCTTGTCTCCTGCCCAAGTTGCTCGTGTTGGACATGCATCATCAGGCCCTTCAAAATTTATGTACAGGTCTCTTTTAGCAGACATCATACAACCACAGCACCTGAAAGAGCTGTGCTCTGTTCTAGTGCTAGTAGCTGGTCAAGCCACTAAAACACTTACAGACCAGAAAAATTTAATGGACAAGCACACAGAAGATCGGACAGAAAATTCTCTTGCTTCTTCAAATCAAGAGCAATTGCCAAATCAAAAGGAAGCTGATGCTGAGAAAGCTATGGCTGATGATTGTTCTAGTGCAAACCAAACTGATAAAACCAGTCCGGAAAACTCCAGTTCAGATGGTACTGATGCTTCAAAAGGGAGGCCAATGTCTCCTGGAACTCTAGCATTGATGTGTGATGAGCAAGATACAATGTTCATGACTGCGGCCCCCTCTATTGGGTCAATGCCCCATGCTTGCAACACATCTTCACAATTGCCTCGAGGACAAGGAGCAACAGAGATCTATGCAGAGCAAGAAAGAATTGTATTGACAAAATTCAGAGATTTTCTTAATAGGGTTATCACTATGGGAGAAATAAATGAAACAAAGTGTTCTTCACTAGCCAGAAGTGAGTCAGAGATTCAAAAGGATCCAATCATCAAAAGCACTGTAAATGCCAGTACCGAAGCAGCACATCAGCAAGGACTGGGAGCCACCAGCAATGGTGTTGCCAAAGCTGTCAGCAACCCCACCACTTCAACATCATCTTTGGTTCCTTGTAGTCTTGTTTCAGAAAATAGGGAAATTAAACCGAAGGTCGAAAAATAG 1689 0.4334 MGEGEGSDIPPKNVPFDSSSNSNSKKLARQLDFNAVGGTPVTVPLPEQPQQPPAILPPATLPPLPSAKLGKPESPKSKSRASSETKDATPKKQKQCNCKHSKCLKLYCECFASGIYCDGCNCVNCFNNVDNEAARREAVEATLERNPNAFRPKIASSPHGTRDNREEAGEVLILAKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDQNNNMAFIQQAANAAITGAIGSSGYSSPPVSRKRKGSELWPSVKDPSVSKLGQQANPIRGPGAPSSSLSPAQVARVGHASSGPSKFMYRSLLADIIQPQHLKELCSVLVLVAGQATKTLTDQKNLMDKHTEDRTENSLASSNQEQLPNQKEADAEKAMADDCSSANQTDKTSPENSSSDGTDASKGRPMSPGTLALMCDEQDTMFMTAAPSIGSMPHACNTSSQLPRGQGATEIYAEQERIVLTKFRDFLNRVITMGEINETKCSSLARSESEIQKDPIIKSTVNASTEAAHQQGLGATSNGVAKAVSNPTTSTSSLVPCSLVSENREIKPKVEK 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06335 562 PANTHER TESMIN/TSO1-RELATED 15 486 IPR028307 -
Vivi5g06335 562 MobiDBLite consensus disorder prediction 13 29 - -
Vivi5g06335 562 MobiDBLite consensus disorder prediction 1 91 - -
Vivi5g06335 562 MobiDBLite consensus disorder prediction 518 546 - -
Vivi5g06335 562 MobiDBLite consensus disorder prediction 73 91 - -
Vivi5g06335 562 MobiDBLite consensus disorder prediction 274 301 - -
Vivi5g06335 562 MobiDBLite consensus disorder prediction 388 411 - -
Vivi5g06335 562 SMART CXC_2 91 131 IPR033467 -
Vivi5g06335 562 SMART CXC_2 176 217 IPR033467 -
Vivi5g06335 562 MobiDBLite consensus disorder prediction 250 307 - -
Vivi5g06335 562 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 93 128 IPR005172 -
Vivi5g06335 562 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 179 213 IPR005172 -
Vivi5g06335 562 MobiDBLite consensus disorder prediction 45 69 - -
Vivi5g06335 562 MobiDBLite consensus disorder prediction 349 421 - -
Vivi5g06335 562 ProSiteProfiles CRC domain profile. 92 216 IPR005172 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06335 Vivi-Chr5 169767173 169772618 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06335 1 496 CPP Transcription Factor Family AT4G29000 57.904 0.0 563
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Vivi5g06335 TCR 2.9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06335 - - psat:127100492 965.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g06335 5 169767173 169772618 Vivi5g06335 5 169767173 169772618 ECH