Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06333 ATGGGGACGGAGCGTCCATCCAAGAGTTGGAGCATCCATACCCGATCGGAGATCATCGCCAACTACCAAGTCATGGAACGCATCGGCTCCGGCGCATACGCCGACGTCTACCGCGGCCGTCGTCTCTCCGACGACCTAACCGTCGCTCTCAAGGAAATCCACGACTACCAGTCCGCTTTCCGAGAAATCGAAGCGTTGCAGATGCTTCAAGGCTCTCAGAACGTTATCGTCATGCACGAGTACTTCTGGCGCGAAGATGAAGACGCGGTTCTCGTTCTTGAGTATCTTACCACTGATTTGACTACGGTTATTTCCAATGCTTCTAAGGAAGGTGCTTCGCTTCCTGTTGGTGAGATGAAACGGTGGATGATTCAGATTCTTTCTGGTCTTGATGCTTGTCACCGGAATATGATTGTTCATCGTGATTTGAAGCCTTCTAATCTGTTGATTTCGGATAGCGGTGTTCTTAAATTGGCTGATTTTGGACAGGCAAGGATACTCACAGAACCTGGATTTGATGCTTTTGAAGGGAATCCACCACCGAGCGAGCATGATGGTTCTAATCATGAAAGTTCACTTCATCATCCTGAAGTTTTTCCTCTCACCGACAACTTAAATCAATTTGGATGTGGAAATCAAGAGCAGGGAAGCAGTCATAATGAGTATTTTAGTGTTTTAGACGAGCTGAAAACGAAGAGTTCTGTGGAAGACACTGAAAAGGATACAAGCATTCCAGACGGAAATACTTCTTGTCTTGCAACGTGCACAACAAGTGATATGGATAATGATCCTATGAGAACTTCTTTTAGTTATGAAGCAATGGAGCAGGAAGATAAAGAACATGGTGGTTTCACATCATGTGTTGGAACTCGTTGGTTCCGGGCTCCGGAGTTGCTTTATGGATCCATAAACTATGGTTTAGAAATTGATCTCTGGTCACTTGGCTGTATTTTTGCGGAACTCATGACTCTGAAACCCTTGTTTCCTGGAACGGCTGATATTGACCAGCTCAGCAAAATTATTAATGTTTTGGGCAACCTTGACGAGAGAGCTTGGCCTGGCTGCTCAGAACTTCCTGATTACAGAATAATCTCGTTTAGCAAGGTAGAAAACCCTCCTGGTGTTGAAGCCTGCCTGCCCAACCGCTCAGCCGATGAAGTATCTCTTGTCAAAAACCTGGTTTGTTATGATCCGTCTAGGAGGGCTACAACAATGGAGCTACTCCAGGACAAGTACTTTAACGAAGAACCTCTTCCTGTTCCCATTTCTGAGTTGCGAGTTCCTCTGACTAGAAATACTGAAGATGAGGATTCTATTGGTGGGTGGCAGGATTACAATGACATGGGTTCTGATTCTGATTTCGATGACTTTGGCCCTATGAATTTCACCAGAACTGACAATGGTTTCTCCATACAGTTTCCTTGA 1425 0.4533 MGTERPSKSWSIHTRSEIIANYQVMERIGSGAYADVYRGRRLSDDLTVALKEIHDYQSAFREIEALQMLQGSQNVIVMHEYFWREDEDAVLVLEYLTTDLTTVISNASKEGASLPVGEMKRWMIQILSGLDACHRNMIVHRDLKPSNLLISDSGVLKLADFGQARILTEPGFDAFEGNPPPSEHDGSNHESSLHHPEVFPLTDNLNQFGCGNQEQGSSHNEYFSVLDELKTKSSVEDTEKDTSIPDGNTSCLATCTTSDMDNDPMRTSFSYEAMEQEDKEHGGFTSCVGTRWFRAPELLYGSINYGLEIDLWSLGCIFAELMTLKPLFPGTADIDQLSKIINVLGNLDERAWPGCSELPDYRIISFSKVENPPGVEACLPNRSADEVSLVKNLVCYDPSRRATTMELLQDKYFNEEPLPVPISELRVPLTRNTEDEDSIGGWQDYNDMGSDSDFDDFGPMNFTRTDNGFSIQFP 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06333 474 Pfam Protein kinase domain 22 172 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g06333 474 Pfam Protein kinase domain 279 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g06333 474 ProSitePatterns Protein kinases ATP-binding region signature. 28 51 IPR017441 GO:0005524
Vivi5g06333 474 PANTHER CELL DIVISION PROTEIN KINASE 21 419 - -
Vivi5g06333 474 SMART serkin_6 22 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g06333 474 Gene3D Transferase(Phosphotransferase) domain 1 109 416 - -
Vivi5g06333 474 SUPERFAMILY Protein kinase-like (PK-like) 10 432 IPR011009 -
Vivi5g06333 474 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Vivi5g06333 474 Gene3D Phosphorylase Kinase; domain 1 13 108 - -
Vivi5g06333 474 FunFam Cyclin-dependent kinase F-1 13 107 - -
Vivi5g06333 474 ProSiteProfiles Protein kinase domain profile. 22 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g06333 474 MobiDBLite consensus disorder prediction 171 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06333 Vivi-Chr5 169756382 169759105 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06333 4 474 Core Cell Cycle Gene Families AT4G28980 62.134 0.0 607
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CCRK Vivi5g06333 Pkinase 2e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06333 - - qsa:O6P43_004009 706.057