Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06327 ATGTGGTCCGAAAGGGATACGTCTATTGAATTTGTGAGCAGCAATTCCAGCAGTAGATCCTCCCAGGCACCATTATATCCTCAAAGAGTCTCTCCTAGAGTCCTTGATGTCAATCCCCCAAAATCTTCAAAAAATTGGATAGCACCAGTCTATTTAAACTCAGGCCCTGAAACTCAATTTTCTTTAGATGAGAATTCGCTTTGTTCTTCTTCAGATTCTGAAGCTGAAAATGAGGAAAAAGACAAAAATACAGCATTGTTGGAGCCTCAACAAAGCCAAACCCAGGAACAAATGCTAGCTATCTTGAAAGAATCCATGGGCTTCCCGGATAATAAAATGGCAGATTACGAAAACACGTTGCTGAATGGAAGTGGGAAACAAACGCCTCCTAAAGACTTTGTCTGTCCAATAACTAGTAATATATTTGATGATCCTGTGACTCTTGAGACTGGTCAGACATATGAACGAAAAGCTATCGAGGAATGGTTCAATAGAGAGAACATAACTTGTCCTATAACTCGCCAGAAGCTGCAAAATACCAAGCTACCTAAAACAAATTATGTGCTCAAAAGATTAGTTGCCAGCTGGAAAGAATGCAACCCCAGTTCAGTCCTGCCAACATGTGAGAGTCCATTCAAAGATAACGAAGAAGAAATAAAGACAACAATGCCTTCAGCTTCTCCTAATAGTGTCATAGCACAAGCCACCGCTGATGGGATGATTAGTGAGTTACGCTGTGCAATCAATAACCTGTACATGTCAGAGATTCTCCAGGAATCTGAAATGGCGGTTCTTCAAATTGAGAAGCTTTGGAGAGGAGGGAATATGGGAGTGGATATCCATAGCATGCTATCAAAACCTCCAATAATTAACGGGTTTATGGAGATACTTTTCAATTCTGTTGAACCCCAGGTCCTACAAGCAGCAGTTTTTCTTCTGGCCGAGATGGGGTCTAGAGACAATGTTGTTATTCAGACTCTCACACGTGTGGATACCGATGTTGAATGTATAATGGCTCTTTTCAAGAAAGGGTTGACTGAGGCTGTTGTGCTATTGTATGTCCTAAACCCTCCCACTGTGACTCTTACCGAGATGGCCATAGTGGAGTCCCTCATAGAAGTTTTCATTAAGAAAGAGGAAGACTTGGTTAAGATGTGTTTAAATCCAAGAACAGCAGCGGTTCTTCTACTGGCACAGGTTATTGGAGGCAGCGATGAGATAATTGCGTCTTCGATTGTCAAAACTATGTTCTCTGAGAAAGCAATTGAAGCTGTTGTTGGAAGTTTGGGAGCTGAATGGGCAGAGGAGAGGATTGCTGCAGTGGAGATCTTATTGAGATGCATGCAAGAGGATGGAACTTGCAGGAACACCATTGCAGATAAAGCAGAGCTGTCTCCTATTCTTGAAAGCTTCATCAGTGCAACAGATGCAGAACGTTTCAAGATTGTTGAATTTTTTTCTGAGTTGATCAAACTAAATAGGAGAACATTCAATGAACGAATCCTCCACATTATTAAGGAAGAAGGACCTTTTAGTACAATGCACACTCTTCTTATTTATTTGCAGACAGCCCTTCAAGATCAAAGGCCAGTCATGGCTAGTCTTTTACTCCAACTTGATCTTCTGGTTGAACCAAGAATGATGAGCATTTACCGTGAAGAGGCGATAGATACTCTTATTTCATGCCTGGGGAACTCAGATTTCCCTACTACCCAGTTAGCAGCTGCTGATACAATTATGTCACTGCAGGGGAGGTTCAACTCCTTTGGAAAGCCCCTTATCAGAGAAGTCCTTCTCAAACGTGCAGGTATTGACAAAAGTCCCAGAAGTGCTGTACAGGAGGACCATATCAACAACTTCTCAGAAGTCGAAACAATTCCAGAAGAAGAGAAGGCAGCAGATGATTGGGAAAGAAAAATTGCATCTGTTCTAGTTAGCCACGAGTTTGGTATACTCTTTGAAGCTTTGGCAGATGGCATGAAGAGCAGAATTCCAGAACTGCGTTCAGCATGCTTTATTTCCGCTACGTGGCTCGTAAACATGCTGACCATTCTACCAGATACAGGGATACAAGGAGCAGCCCGTGTCTGTCTGCTAAAGCAGTTCGTAAATAAATTAAATTCTGCCAAGGACATAGAACACCGAATCCTCTCTATGCTTGCTCTCAACAGCTTTCTTCATTTTTCTGATGGCGTACGTGATCTAACTGCTTCCTACGCTAAGGATATCTTAAAAGGTTTGAGAGAGCTAAAGAGATTTTCTCTCTTGGCATCTGAAATGCTGAACGTTTTGGTTGATGAAAACCAGTCTAAAACAGACATTTGGAGACATAAAGAGCTAATTCAAATAGACTGCAGAGATAATGGAGAAGTGTTGTCTGTCATTTGGTTCAAGGATAAAATTATATCAGGCCATACAGATGGAAGAATCAAGGTCTGGACATTAAAAGATAACTTATTACTTCTGTTGCAAGAGATCCAAGAACATACTAAGGCCGTGACAAGCTTGACGATTTCAGAATCTGGTGACCGACTTTACAGTGGTTCACTTGACCGAAGTGCAAAGATCTGGTCTATTGGAAAGGAAGCAATACATTGTGAGCAGGTGCAAGATATGAAGGACCAGATTCATAATTTAGTTGTAACTAATAGCACAACTTGTTTCATTCCACAGGGGGCAGGAGTCAAGGTTCACTCATTGAATGGAGAATCCAAATTGTTAAATTCTAGTAAATATGTGAAGTGTTTGGCTTATGCTCTTGGAAGATTATATTGTGGATGCCATGACAGTAGTGTTCAGGAGATACATTTGGCCACTGGAACTATTAGTAATATTCAAAGTGGTTTTAAAAGATTACTAGGGAAATCCAATCCTATTCATGCTCTGAAAATTCATGGTGAACTTATATATGCAGCTGGCTCTTCCTTGGACGGAACTGCTATAAAGATATGGAACAATTCCAATTACAGCATGGTTGGATCACTGCAAACTGGATCAGAAGTGAGGGCTATGGCAGTGAGTTCAGAATTAATTTATTTGGGGTGCAAGGGAGGTGTTGTAGAAATTTGGGATAAGAAGAAACACATTAGAGTTGACACGTTACAGTTGGGTACAAATTGTAAGGTTAATTGCATGACTCTAGACAGCAATGAAGAAATTTTGGTGATTGGAACTTCAGATGGCCAAATTCAGGCTTGGGAAATGACTTAA 3210 0.409 MWSERDTSIEFVSSNSSSRSSQAPLYPQRVSPRVLDVNPPKSSKNWIAPVYLNSGPETQFSLDENSLCSSSDSEAENEEKDKNTALLEPQQSQTQEQMLAILKESMGFPDNKMADYENTLLNGSGKQTPPKDFVCPITSNIFDDPVTLETGQTYERKAIEEWFNRENITCPITRQKLQNTKLPKTNYVLKRLVASWKECNPSSVLPTCESPFKDNEEEIKTTMPSASPNSVIAQATADGMISELRCAINNLYMSEILQESEMAVLQIEKLWRGGNMGVDIHSMLSKPPIINGFMEILFNSVEPQVLQAAVFLLAEMGSRDNVVIQTLTRVDTDVECIMALFKKGLTEAVVLLYVLNPPTVTLTEMAIVESLIEVFIKKEEDLVKMCLNPRTAAVLLLAQVIGGSDEIIASSIVKTMFSEKAIEAVVGSLGAEWAEERIAAVEILLRCMQEDGTCRNTIADKAELSPILESFISATDAERFKIVEFFSELIKLNRRTFNERILHIIKEEGPFSTMHTLLIYLQTALQDQRPVMASLLLQLDLLVEPRMMSIYREEAIDTLISCLGNSDFPTTQLAAADTIMSLQGRFNSFGKPLIREVLLKRAGIDKSPRSAVQEDHINNFSEVETIPEEEKAADDWERKIASVLVSHEFGILFEALADGMKSRIPELRSACFISATWLVNMLTILPDTGIQGAARVCLLKQFVNKLNSAKDIEHRILSMLALNSFLHFSDGVRDLTASYAKDILKGLRELKRFSLLASEMLNVLVDENQSKTDIWRHKELIQIDCRDNGEVLSVIWFKDKIISGHTDGRIKVWTLKDNLLLLLQEIQEHTKAVTSLTISESGDRLYSGSLDRSAKIWSIGKEAIHCEQVQDMKDQIHNLVVTNSTTCFIPQGAGVKVHSLNGESKLLNSSKYVKCLAYALGRLYCGCHDSSVQEIHLATGTISNIQSGFKRLLGKSNPIHALKIHGELIYAAGSSLDGTAIKIWNNSNYSMVGSLQTGSEVRAMAVSSELIYLGCKGGVVEIWDKKKHIRVDTLQLGTNCKVNCMTLDSNEEILVIGTSDGQIQAWEMT 1069
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06327 1069 MobiDBLite consensus disorder prediction 1 42 - -
Vivi5g06327 1069 SUPERFAMILY ARM repeat 254 867 IPR016024 -
Vivi5g06327 1069 MobiDBLite consensus disorder prediction 1 27 - -
Vivi5g06327 1069 ProSitePatterns Trp-Asp (WD) repeats signature. 1054 1068 IPR019775 -
Vivi5g06327 1069 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 1068 - -
Vivi5g06327 1069 SMART WD40_4 1027 1067 IPR001680 GO:0005515
Vivi5g06327 1069 SMART WD40_4 945 985 IPR001680 GO:0005515
Vivi5g06327 1069 SMART WD40_4 893 936 IPR001680 GO:0005515
Vivi5g06327 1069 SMART WD40_4 777 814 IPR001680 GO:0005515
Vivi5g06327 1069 SMART WD40_4 819 858 IPR001680 GO:0005515
Vivi5g06327 1069 SMART WD40_4 988 1024 IPR001680 GO:0005515
Vivi5g06327 1069 Gene3D - 258 489 IPR011989 -
Vivi5g06327 1069 ProSiteProfiles U-box domain profile. 128 203 IPR003613 GO:0004842|GO:0016567
Vivi5g06327 1069 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 826 859 - -
Vivi5g06327 1069 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1035 1069 - -
Vivi5g06327 1069 SUPERFAMILY WD40 repeat-like 797 1068 IPR036322 GO:0005515
Vivi5g06327 1069 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 205 IPR013083 -
Vivi5g06327 1069 SMART Ubox_2 132 196 IPR003613 GO:0004842|GO:0016567
Vivi5g06327 1069 ProSiteProfiles Trp-Asp (WD) repeats profile. 826 859 IPR001680 GO:0005515
Vivi5g06327 1069 ProSiteProfiles Trp-Asp (WD) repeats profile. 1035 1069 IPR001680 GO:0005515
Vivi5g06327 1069 SUPERFAMILY RING/U-box 127 199 - -
Vivi5g06327 1069 MobiDBLite consensus disorder prediction 62 94 - -
Vivi5g06327 1069 Pfam U-box domain 130 199 IPR003613 GO:0004842|GO:0016567
Vivi5g06327 1069 CDD RING-Ubox_PUB 130 182 IPR045210 -
Vivi5g06327 1069 Gene3D - 769 885 IPR015943 GO:0005515
Vivi5g06327 1069 Gene3D - 886 1069 IPR015943 GO:0005515
Vivi5g06327 1069 Pfam WD domain, G-beta repeat 824 858 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06327 Vivi-Chr5 169712618 169719038 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06327 111 196 U-box Gene Family AT1G23030 44.186 3.10e-16 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06327 - - gmx:100787950 1660.2