Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06326 ATGAACTCCGTAACCGTCACAACAAGAGCTCAGATCCTCCGCTACGTAACGGCATTCATCACCGGCGTGATTCATCAATCAGAACTCCGGCGTCACCTCCTTGAAACTCTCCACCGCGAAACTCCTGTAAATCAAGTAAACCTAAAACAACTAAACCTCGCTGCAGACGCTCTTGAAAGCGCTATTTCATCCTCCAGTTCGTCTATTCGTTCCTCTTCTCTCTCCCTCGCCGAGAAGCTTCTCCTTCCTCTCCATGATTTTCCCCTCTCTTCTTTCATCCTCTCCCTCATTCTTATCCTCCGTAACCGTTCTGATGAATCCGCCATCAGTCTCCTCCGAATCTTCCATTTGAATCCTTCCCTCGCTCGATCTGAAATAGCACCATCTCTCTACGAGCGCCTATTTTATATCCATCTCTTTCCTGTTTACCGATGGTTCGATGAACAGAGAACGCTGATTTTGCCATCCACTAGTGAAACCACGAGCCGCGATACTGGAGACTACTCAGACGAGTTTGTGGCTATGCCTTACGCGAAGTTGTTGTCGAATGTGAGCGGTGAACAAGCCTCGAAGCTGAGGGAGTTGGAAAGAGAGTACGAAGAGGTTCTAGATGAGAACTGTAGGGTTCTTGCTTTGTACTTTAAAGAGGTTTTGATGAATAAAGATGAACATACTACGGTTACTCCACCCTTGCTGATACTGAAGAGCGCTGCAGAAGATAGCAATGGTGGTGGCCGAGAGCAGAGAATGGAAGATATGCAAATGCCTGTGTTAAAGAACGGACGGTATAATGTAAATCCAATGTGGTCCGAAAGGGATACGTCTATTGAATTTGTGAGCAGCAATTCCAGCAGTAGATCCTCCCAGGCACCATTATATCCTCAAAGAGTCTCTCCTAGAGTCCTTGATGTCAATCCCCCAAAATCTTCAAAAAATTGGATAGCACCAGTCTATTTAAACTCAGGCCCTGAAACTCAATTTTCTTTAGATGAGAATTCGCTTTGTTCTTCTTCAGATTCTGAAGCTGAAAATGAGGAAAAAGACAAAAATACAGCATTGTTGGAGCCTCAACAAAGCCAAACCCAGGAACAAATGCTAGCTATCTTGAAAGAATCCATGGGCTTCCCGGATAATAAAATGGCAGATTACGAAAACACGTTGCTGAATGGAAGTGGGAAACAAACGCCTCCTAAAGACTTTGTCTGTCCAATAACTAGTAATATATTTGATGATCCTGTGACTCTTGAGACTGGTCAGACATATGAACGAAAAGCTATCGAGGAATGGTTCAATAGAGAGAACATAACTTGTCCTATAACTCGCCAGAAGCTGCAAAATACCAAGCTACCTAAAACAAATTATGTGCTCAAAAGATTAGTTGCCAGCTGGAAAGAATGCAACCCCAGTTCAGTCCTGCCAACATGTGAGAGTCCATTCAAAGATAACGAAGAAGAAATAAAGACAACAATGCCTTCAGCTTCTCCTAATAGTGTCATAGCACAAGCCACCGCTGATGGGATGATTAGTGAGTTACGCTGTGCAATCAATAACCTGTACATGTCAGAGATTCTCCAGGAATCTGAAATGGCGGTTCTTCAAATTGAGAAGCTTTGGAGAGGAGGGAATATGGGAGTGGATATCCATAGCATGCTATCAAAACCTCCAATAATTAACGGGTTTATGGAGATACTTTTCAATTCTGTTGAACCCCAGGTCCTACAAGCAGCAGTTTTTCTTCTGGCCGAGATGGGGTCTAGAGACAATGTTGTTATTCAGACTCTCACACGTGTGGATACCGATGTTGAATGTATAATGGCTCTTTTCAAGAAAGGGTTGACTGAGGCTGTTGTGCTATTGTATGTCCTAAACCCTCCCACTGTGACTCTTACCGAGATGGCCATAGTGGAGTCCCTCATAGAAGTTTTCATTAAGAAAGAGGAAGACTTGGTTAAGATGTGTTTAAATCCAAGAACAGCAGCGGTTCTTCTACTGGCACAGGTTATTGGAGGCAGCGATGAGATAATTGCGTCTTCGATTGTCAAAACTATGTTCTCTGAGAAAGCAATTGAAGCTGTTGTTGGAAGTTTGGGAGCTGAATGGGCAGAGGAGAGGATTGCTGCAGTGGAGATCTTATTGAGATGCATGCAAGAGGATGGAACTTGCAGGAACACCATTGCAGATAAAGCAGAGCTGTCTCCTATTCTTGAAAGCTTCATCAGTGCAACAGATGCAGAACGTTTCAAGATTGTTGAATTTTTTTCTGAGTTGATCAAACTAAATAGGAGAACATTCAATGAACGAATCCTCCACATTATTAAGGAAGAAGGACCTTTTAGTACAATGCACACTCTTCTTATTTATTTGCAGACAGCCCTTCAAGATCAAAGGCCAGTCATGGCTAGTCTTTTACTCCAACTTGATCTTCTGGTTGAACCAAGAATGATGAGCATTTACCGTGAAGAGGCGATAGATACTCTTATTTCATGCCTGGGGAACTCAGATTTCCCTACTACCCAGTTAGCAGCTGCTGATACAATTATGTCACTGCAGGGGAGGTTCAACTCCTTTGGAAAGCCCCTTATCAGAGAAGTCCTTCTCAAACGTGCAGGTATTGACAAAAGTCCCAGAAGTGCTGTACAGGAGGACCATATCAACAACTTCTCAGAAGTCGAAACAATTCCAGAAGAAGAGAAGGCAGCAGATGATTGGGAAAGAAAAATTGCATCTGTTCTAGTTAGCCACGAGTTTGGTATACTCTTTGAAGCTTTGGCAGATGGCATGAAGAGCAGAATTCCAGAACTGCGTTCAGCATGCTTTATTTCCGCTACGTGGCTCGTAAACATGCTGACCATTCTACCAGATACAGGGATACAAGGAGCAGCCCGTGTCTGTCTGCTAAAGCAGTTCGTAAATAAATTAAATTCTGCCAAGGACATAGAACACCGAATCCTCTCTATGCTTGCTCTCAACAGCTTTCTTCATTTTTCTGATGGCGTACGTGATCTAACTGCTTCCTACGCTAAGGATATCTTAAAAGGTTTGAGAGAGCTAAAGAGATTTTCTCTCTTGGCATCTGAAATGCTGAACGTTTTGGTTGATGAAAACCAGTCTAAAACAGACATTTGGAGACATAAAGAGCTAATTCAAATAGACTGCAGAGATAATGGAGAAGTGTTGTCTGTCATTTGGTTCAAGGATAAAATTATATCAGGCCATACAGATGGAAGAATCAAGGTCTGGACATTAAAAGATAACTTATTACTTCTGTTGCAAGAGATCCAAGAACATACTAAGGCCGTGACAAGCTTGACGATTTCAGAATCTGGTGACCGACTTTACAGTGGTTCACTTGACCGAAGTGCAAAGATCTGGTCTATTGGAAAGGAAGCAATACATTGTGAGCAGGTGCAAGATATGAAGGACCAGATTCATAATTTAGTTGTAACTAATAGCACAACTTGTTTCATTCCACAGGGGGCAGGAGTCAAGGTTCACTCATTGAATGGAGAATCCAAATTGTTAAATTCTAGTAAATATGTGAAGTGTTTGGCTTATGCTCTTGGAAGATTATATTGTGGATGCCATGACAGTAGTGTTCAGGAGATACATTTGGCCACTGGAACTATTAGTAATATTCAAAGTGGTTTTAAAAGATTACTAGGGAAATCCAATCCTATTCATGCTCTGAAAATTCATGGTGAACTTATATATGCAGCTGGCTCTTCCTTGGACGGAACTGCTATAAAGATATGGAACAATTCCAATTACAGCATGGTTGGATCACTGCAAACTGGATCAGAAGTGAGGGCTATGGCAGTGAGTTCAGAATTAATTTATTTGGGGTGCAAGGGAGGTGTTGTAGAAATTTGGGATAAGAAGAAACACATTAGAGTTGACACGTTACAGTTGGGTACAAATTGTAAGGTTAATTGCATGACTCTAGACAGCAATGAAGAAATTTTGGTGATTGGAACTTCAGATGGCCAAATTCAGGCTTGGGAAATGACTTAA 4011 0.4211 MNSVTVTTRAQILRYVTAFITGVIHQSELRRHLLETLHRETPVNQVNLKQLNLAADALESAISSSSSSIRSSSLSLAEKLLLPLHDFPLSSFILSLILILRNRSDESAISLLRIFHLNPSLARSEIAPSLYERLFYIHLFPVYRWFDEQRTLILPSTSETTSRDTGDYSDEFVAMPYAKLLSNVSGEQASKLRELEREYEEVLDENCRVLALYFKEVLMNKDEHTTVTPPLLILKSAAEDSNGGGREQRMEDMQMPVLKNGRYNVNPMWSERDTSIEFVSSNSSSRSSQAPLYPQRVSPRVLDVNPPKSSKNWIAPVYLNSGPETQFSLDENSLCSSSDSEAENEEKDKNTALLEPQQSQTQEQMLAILKESMGFPDNKMADYENTLLNGSGKQTPPKDFVCPITSNIFDDPVTLETGQTYERKAIEEWFNRENITCPITRQKLQNTKLPKTNYVLKRLVASWKECNPSSVLPTCESPFKDNEEEIKTTMPSASPNSVIAQATADGMISELRCAINNLYMSEILQESEMAVLQIEKLWRGGNMGVDIHSMLSKPPIINGFMEILFNSVEPQVLQAAVFLLAEMGSRDNVVIQTLTRVDTDVECIMALFKKGLTEAVVLLYVLNPPTVTLTEMAIVESLIEVFIKKEEDLVKMCLNPRTAAVLLLAQVIGGSDEIIASSIVKTMFSEKAIEAVVGSLGAEWAEERIAAVEILLRCMQEDGTCRNTIADKAELSPILESFISATDAERFKIVEFFSELIKLNRRTFNERILHIIKEEGPFSTMHTLLIYLQTALQDQRPVMASLLLQLDLLVEPRMMSIYREEAIDTLISCLGNSDFPTTQLAAADTIMSLQGRFNSFGKPLIREVLLKRAGIDKSPRSAVQEDHINNFSEVETIPEEEKAADDWERKIASVLVSHEFGILFEALADGMKSRIPELRSACFISATWLVNMLTILPDTGIQGAARVCLLKQFVNKLNSAKDIEHRILSMLALNSFLHFSDGVRDLTASYAKDILKGLRELKRFSLLASEMLNVLVDENQSKTDIWRHKELIQIDCRDNGEVLSVIWFKDKIISGHTDGRIKVWTLKDNLLLLLQEIQEHTKAVTSLTISESGDRLYSGSLDRSAKIWSIGKEAIHCEQVQDMKDQIHNLVVTNSTTCFIPQGAGVKVHSLNGESKLLNSSKYVKCLAYALGRLYCGCHDSSVQEIHLATGTISNIQSGFKRLLGKSNPIHALKIHGELIYAAGSSLDGTAIKIWNNSNYSMVGSLQTGSEVRAMAVSSELIYLGCKGGVVEIWDKKKHIRVDTLQLGTNCKVNCMTLDSNEEILVIGTSDGQIQAWEMT 1336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06326 1336 Gene3D - 1035 1152 IPR015943 GO:0005515
Vivi5g06326 1336 SUPERFAMILY ARM repeat 521 1134 IPR016024 -
Vivi5g06326 1336 Pfam WD domain, G-beta repeat 1091 1125 IPR001680 GO:0005515
Vivi5g06326 1336 MobiDBLite consensus disorder prediction 329 361 - -
Vivi5g06326 1336 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 379 472 IPR013083 -
Vivi5g06326 1336 SUPERFAMILY WD40 repeat-like 1064 1335 IPR036322 GO:0005515
Vivi5g06326 1336 ProSitePatterns Trp-Asp (WD) repeats signature. 1321 1335 IPR019775 -
Vivi5g06326 1336 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1093 1126 - -
Vivi5g06326 1336 ProSiteProfiles Trp-Asp (WD) repeats profile. 1302 1336 IPR001680 GO:0005515
Vivi5g06326 1336 Pfam U-box domain 397 466 IPR003613 GO:0004842|GO:0016567
Vivi5g06326 1336 ProSiteProfiles Trp-Asp (WD) repeats profile. 1093 1126 IPR001680 GO:0005515
Vivi5g06326 1336 SMART Ubox_2 399 463 IPR003613 GO:0004842|GO:0016567
Vivi5g06326 1336 CDD RING-Ubox_PUB 397 449 IPR045210 -
Vivi5g06326 1336 ProSiteProfiles U-box domain profile. 395 470 IPR003613 GO:0004842|GO:0016567
Vivi5g06326 1336 SUPERFAMILY RING/U-box 394 466 - -
Vivi5g06326 1336 Gene3D - 1153 1336 IPR015943 GO:0005515
Vivi5g06326 1336 Coils Coil 185 205 - -
Vivi5g06326 1336 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 4 1335 - -
Vivi5g06326 1336 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1302 1336 - -
Vivi5g06326 1336 SMART WD40_4 1294 1334 IPR001680 GO:0005515
Vivi5g06326 1336 SMART WD40_4 1255 1291 IPR001680 GO:0005515
Vivi5g06326 1336 SMART WD40_4 1086 1125 IPR001680 GO:0005515
Vivi5g06326 1336 SMART WD40_4 1212 1252 IPR001680 GO:0005515
Vivi5g06326 1336 SMART WD40_4 1160 1203 IPR001680 GO:0005515
Vivi5g06326 1336 SMART WD40_4 1044 1081 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06326 Vivi-Chr5 169710741 169719040 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06326 378 463 U-box Gene Family AT1G23030 44.186 3.48e-16 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06326 - - gmx:100808867 1921.36