Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06325 ATGAACTCCGTAACCGTCACAACAAGAGCTCAGATCCTCCGCTACGTAACGGCATTCATCACCGGCGTGATTCATCAATCAGAACTCCGGCGTCACCTCCTTGAAACTCTCCACCGCGAAACTCCTGTAAATCAAGTAAACCTAAAACAACTAAACCTCGCTGCAGACGCTCTTGAAAGCGCTATTTCATCCTCCAGTTCGTCTATTCGTTCCTCTTCTCTCTCCCTCGCCGAGAAGCTTCTCCTTCCTCTCCATGATTTTCCCCTCTCTTCTTTCATCCTCTCCCTCATTCTTATCCTCCGTAACCGTTCTGATGAATCCGCCATCAGTCTCCTCCGAATCTTCCATTTGAATCCTTCCCTCGCTCGATCTGAAATAGCACCATCTCTCTACGAGCGCCTATTTTATATCCATCTCTTTCCTGTTTACCGATGGTTCGATGAACAGAGAACGCTGATTTTGCCATCCACTAGTGAAACCACGAGCCGCGATACTGGAGACTACTCAGACGAGTTTGTGGCTATGCCTTACGCGAAGTTGTTGTCGAATGTGAGCGGTGAACAAGCCTCGAAGCTGAGGGAGTTGGAAAGAGAGTACGAAGAGGTTCTAGATGAGAACTGTAGGGTTCTTGCTTTGTACTTTAAAGAGGTTTTGATGAATAAAGATGAACATACTACGGTTACTCCACCCTTGCTGATACTGAAGAGCGCTGCAGAAGATAGCAATGGTGGTGGCCGAGAGCAGAGAATGGAAGATATGCAAATGCCTGTGTTAAAGAACGGACGGTATAATCCAATGTGGTCCGAAAGGGATACGTCTATTGAATTTGTGAGCAGCAATTCCAGCAGTAGATCCTCCCAGGCACCATTATATCCTCAAAGAGTCTCTCCTAGAGTCCTTGATGTCAATCCCCCAAAATCTTCAAAAAATTGGATAGCACCAGTCTATTTAAACTCAGGCCCTGAAACTCAATTTTCTTTAGATGAGAATTCGCTTTGTTCTTCTTCAGATTCTGAAGCTGAAAATGAGGAAAAAGACAAAAATACAGCATTGTTGGAGCCTCAACAAAGCCAAACCCAGGAACAAATGCTAGCTATCTTGAAAGAATCCATGGGCTTCCCGGATAATAAAATGGCAGATTACGAAAACACGTTGCTGAATGGAAGTGGGAAACAAACGCCTCCTAAAGACTTTGTCTGTCCAATAACTAGTAATATATTTGATGATCCTGTGACTCTTGAGACTGGTCAGACATATGAACGAAAAGCTATCGAGGAATGGTTCAATAGAGAGAACATAACTTGTCCTATAACTCGCCAGAAGCTGCAAAATACCAAGCTACCTAAAACAAATTATGTGCTCAAAAGATTAGTTGCCAGCTGGAAAGAATGCAACCCCAGTTCAGTCCTGCCAACATGTGAGAGTCCATTCAAAGATAACGAAGAAGAAATAAAGACAACAATGCCTTCAGCTTCTCCTAATAGTGTCATAGCACAAGCCACCGCTGATGGGATGATTAGTGAGTTACGCTGTGCAATCAATAACCTGTACATGTCAGAGATTCTCCAGGAATCTGAAATGGCGGTTCTTCAAATTGAGAAGCTTTGGAGAGGAGGGAATATGGGAGTGGATATCCATAGCATGCTATCAAAACCTCCAATAATTAACGGGTTTATGGAGATACTTTTCAATTCTGTTGAACCCCAGGTCCTACAAGCAGCAGTTTTTCTTCTGGCCGAGATGGGGTCTAGAGACAATGTTGTTATTCAGACTCTCACACGTGTGGATACCGATGTTGAATGTATAATGGCTCTTTTCAAGAAAGGGTTGACTGAGGCTGTTGTGCTATTGTATGTCCTAAACCCTCCCACTGTGACTCTTACCGAGATGGCCATAGTGGAGTCCCTCATAGAAGTTTTCATTAAGAAAGAGGAAGACTTGGTTAAGATGTGTTTAAATCCAAGAACAGCAGCGGTTCTTCTACTGGCACAGGTTATTGGAGGCAGCGATGAGATAATTGCGTCTTCGATTGTCAAAACTATGTTCTCTGAGAAAGCAATTGAAGCTGTTGTTGGAAGTTTGGGAGCTGAATGGGCAGAGGAGAGGATTGCTGCAGTGGAGATCTTATTGAGATGCATGCAAGAGGATGGAACTTGCAGGAACACCATTGCAGATAAAGCAGAGCTGTCTCCTATTCTTGAAAGCTTCATCAGTGCAACAGATGCAGAACGTTTCAAGATTGTTGAATTTTTTTCTGAGTTGATCAAACTAAATAGGAGAACATTCAATGAACGAATCCTCCACATTATTAAGGAAGAAGGACCTTTTAGTACAATGCACACTCTTCTTATTTATTTGCAGACAGCCCTTCAAGATCAAAGGCCAGTCATGGCTAGTCTTTTACTCCAACTTGATCTTCTGGTTGAACCAAGAATGATGAGCATTTACCGTGAAGAGGCGATAGATACTCTTATTTCATGCCTGGGGAACTCAGATTTCCCTACTACCCAGTTAGCAGCTGCTGATACAATTATGTCACTGCAGGGGAGGTTCAACTCCTTTGGAAAGCCCCTTATCAGAGAAGTCCTTCTCAAACGTGCAGGTATTGACAAAAGTCCCAGAAGTGCTGTACAGGAGGACCATATCAACAACTTCTCAGAAGTCGAAACAATTCCAGAAGAAGAGAAGGCAGCAGATGATTGGGAAAGAAAAATTGCATCTGTTCTAGTTAGCCACGAGTTTGGTATACTCTTTGAAGCTTTGGCAGATGGCATGAAGAGCAGAATTCCAGAACTGCGTTCAGCATGCTTTATTTCCGCTACGTGGCTCGTAAACATGCTGACCATTCTACCAGATACAGGGATACAAGGAGCAGCCCGTGTCTGTCTGCTAAAGCAGTTCGTAAATAAATTAAATTCTGCCAAGGACATAGAACACCGAATCCTCTCTATGCTTGCTCTCAACAGCTTTCTTCATTTTTCTGATGGCGTACGTGATCTAACTGCTTCCTACGCTAAGGATATCTTAAAAGGTTTGAGAGAGCTAAAGAGATTTTCTCTCTTGGCATCTGAAATGCTGAACGTTTTGGTTGATGAAAACCAGTCTAAAACAGACATTTGGAGACATAAAGAGCTAATTCAAATAGACTGCAGAGATAATGGAGAAGTGTTGTCTGTCATTTGGTTCAAGGATAAAATTATATCAGGCCATACAGATGGAAGAATCAAGGTCTGGACATTAAAAGATAACTTATTACTTCTGTTGCAAGAGATCCAAGAACATACTAAGGCCGTGACAAGCTTGACGATTTCAGAATCTGGTGACCGACTTTACAGTGGTTCACTTGACCGAAGTGCAAAGATCTGGTCTATTGGAAAGGAAGCAATACATTGTGAGCAGGTGCAAGATATGAAGGACCAGATTCATAATTTAGTTGTAACTAATAGCACAACTTGTTTCATTCCACAGGGGGCAGGAGTCAAGGTTCACTCATTGAATGGAGAATCCAAATTGTTAAATTCTAGTAAATATGTGAAGTGTTTGGCTTATGCTCTTGGAAGATTATATTGTGGATGCCATGACAGTAGTGTTCAGGAGATACATTTGGCCACTGGAACTATTAGTAATATTCAAAGTGGTTTTAAAAGATTACTAGGGAAATCCAATCCTATTCATGCTCTGAAAATTCATGGTGAACTTATATATGCAGCTGGCTCTTCCTTGGACGGAACTGCTATAAAGATATGGAACAATTCCAATTACAGCATGGTTGGATCACTGCAAACTGGATCAGAAGTGAGGGCTATGGCAGTGAGTTCAGAATTAATTTATTTGGGGTGCAAGGGAGGTGTTGTAGAAATTTGGGATAAGAAGAAACACATTAGAGTTGACACGTTACAGTTGGGTACAAATTGTAAGGTTAATTGCATGACTCTAGACAGCAATGAAGAAATTTTGGTGATTGGAACTTCAGATGGCCAAATTCAGGCTTGGGAAATGACTTAA 4005 0.4215 MNSVTVTTRAQILRYVTAFITGVIHQSELRRHLLETLHRETPVNQVNLKQLNLAADALESAISSSSSSIRSSSLSLAEKLLLPLHDFPLSSFILSLILILRNRSDESAISLLRIFHLNPSLARSEIAPSLYERLFYIHLFPVYRWFDEQRTLILPSTSETTSRDTGDYSDEFVAMPYAKLLSNVSGEQASKLRELEREYEEVLDENCRVLALYFKEVLMNKDEHTTVTPPLLILKSAAEDSNGGGREQRMEDMQMPVLKNGRYNPMWSERDTSIEFVSSNSSSRSSQAPLYPQRVSPRVLDVNPPKSSKNWIAPVYLNSGPETQFSLDENSLCSSSDSEAENEEKDKNTALLEPQQSQTQEQMLAILKESMGFPDNKMADYENTLLNGSGKQTPPKDFVCPITSNIFDDPVTLETGQTYERKAIEEWFNRENITCPITRQKLQNTKLPKTNYVLKRLVASWKECNPSSVLPTCESPFKDNEEEIKTTMPSASPNSVIAQATADGMISELRCAINNLYMSEILQESEMAVLQIEKLWRGGNMGVDIHSMLSKPPIINGFMEILFNSVEPQVLQAAVFLLAEMGSRDNVVIQTLTRVDTDVECIMALFKKGLTEAVVLLYVLNPPTVTLTEMAIVESLIEVFIKKEEDLVKMCLNPRTAAVLLLAQVIGGSDEIIASSIVKTMFSEKAIEAVVGSLGAEWAEERIAAVEILLRCMQEDGTCRNTIADKAELSPILESFISATDAERFKIVEFFSELIKLNRRTFNERILHIIKEEGPFSTMHTLLIYLQTALQDQRPVMASLLLQLDLLVEPRMMSIYREEAIDTLISCLGNSDFPTTQLAAADTIMSLQGRFNSFGKPLIREVLLKRAGIDKSPRSAVQEDHINNFSEVETIPEEEKAADDWERKIASVLVSHEFGILFEALADGMKSRIPELRSACFISATWLVNMLTILPDTGIQGAARVCLLKQFVNKLNSAKDIEHRILSMLALNSFLHFSDGVRDLTASYAKDILKGLRELKRFSLLASEMLNVLVDENQSKTDIWRHKELIQIDCRDNGEVLSVIWFKDKIISGHTDGRIKVWTLKDNLLLLLQEIQEHTKAVTSLTISESGDRLYSGSLDRSAKIWSIGKEAIHCEQVQDMKDQIHNLVVTNSTTCFIPQGAGVKVHSLNGESKLLNSSKYVKCLAYALGRLYCGCHDSSVQEIHLATGTISNIQSGFKRLLGKSNPIHALKIHGELIYAAGSSLDGTAIKIWNNSNYSMVGSLQTGSEVRAMAVSSELIYLGCKGGVVEIWDKKKHIRVDTLQLGTNCKVNCMTLDSNEEILVIGTSDGQIQAWEMT 1334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06325 1334 ProSiteProfiles Trp-Asp (WD) repeats profile. 1091 1124 IPR001680 GO:0005515
Vivi5g06325 1334 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1300 1334 - -
Vivi5g06325 1334 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 4 1333 - -
Vivi5g06325 1334 ProSiteProfiles Trp-Asp (WD) repeats profile. 1300 1334 IPR001680 GO:0005515
Vivi5g06325 1334 SUPERFAMILY ARM repeat 519 1132 IPR016024 -
Vivi5g06325 1334 SUPERFAMILY WD40 repeat-like 1062 1333 IPR036322 GO:0005515
Vivi5g06325 1334 CDD RING-Ubox_PUB 395 447 IPR045210 -
Vivi5g06325 1334 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 377 470 IPR013083 -
Vivi5g06325 1334 ProSiteProfiles U-box domain profile. 393 468 IPR003613 GO:0004842|GO:0016567
Vivi5g06325 1334 SMART Ubox_2 397 461 IPR003613 GO:0004842|GO:0016567
Vivi5g06325 1334 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1091 1124 - -
Vivi5g06325 1334 Gene3D - 1033 1150 IPR015943 GO:0005515
Vivi5g06325 1334 MobiDBLite consensus disorder prediction 327 359 - -
Vivi5g06325 1334 ProSitePatterns Trp-Asp (WD) repeats signature. 1319 1333 IPR019775 -
Vivi5g06325 1334 Pfam WD domain, G-beta repeat 1089 1123 IPR001680 GO:0005515
Vivi5g06325 1334 SUPERFAMILY RING/U-box 392 464 - -
Vivi5g06325 1334 Pfam U-box domain 395 464 IPR003613 GO:0004842|GO:0016567
Vivi5g06325 1334 Coils Coil 185 205 - -
Vivi5g06325 1334 Gene3D - 1151 1334 IPR015943 GO:0005515
Vivi5g06325 1334 SMART WD40_4 1084 1123 IPR001680 GO:0005515
Vivi5g06325 1334 SMART WD40_4 1210 1250 IPR001680 GO:0005515
Vivi5g06325 1334 SMART WD40_4 1158 1201 IPR001680 GO:0005515
Vivi5g06325 1334 SMART WD40_4 1253 1289 IPR001680 GO:0005515
Vivi5g06325 1334 SMART WD40_4 1042 1079 IPR001680 GO:0005515
Vivi5g06325 1334 SMART WD40_4 1292 1332 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06325 Vivi-Chr5 169710741 169719041 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06325 376 461 U-box Gene Family AT1G23030 44.186 3.45e-16 82.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g06325 5 169710741 169719041 Vivi5g06325 5 169710741 169719041 ECH