Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06323 ATGAATAGAAGTGTTCATCTTCAAACCTCACCAGTGCAACAACAAATGATGGCTGGAAACCCTAACAACTGGTGGAACCCTCCTGCTCCTGATCATCTTCAACCTCCTTCCAATTACTTTCTTACTCCATATCCTTCTTCATCTTCTCTTCCTCTTCCTCTTCCTTCTTGGCATGAAAATCAACAACTTCCTGATAACTCATGGACTCAACTACTGATGAGCGGCGGCGTGGTGTATGAAGAAGATAAGGAACAAGTTATGCTAACTCAGCCTGCTCTAAGTGCTTCTTCTCTTGTTGATCATGTAAAACATGAAAGTTCAGTGAACAATTATGTCTATGGAAATGAAGAATTTCATGGAACAACAAATTCTACTTGGTCTCAAATAGTGTCGGTGCCTTCTTCTTCTTCCTCCAAATCCAGCATGTTGGATTTCTCTAACAGTGCAAGATCTCCTTCATCAGATCCATCTTCTGATCAGTGTAATAGTGGTGCAGCTGGTGGGGCATTGAAGAAAGCTAGGGTTCAACCATCTACAACTCAGTCTACCTTCAAGGTTAGGAAGGAGAAGTTAGGTGATAGAATTACAGCCCTTCATCAACTTGTTTCACCATTTGGAAAGACTGACACAGCATCTGTCTTATTAGAATCTATTGGTTACATAAGATTCCTTCATAGTCAAATTGAGGCTCTTAGTTTACCATACTTGGGAAATGGATCACCAAACATTATCAAGAACCAGCAACAACAATCTGTTCAAGGTGAGAAAAGTTGTTTCTTCCCTGAACATCCTGGTCAGCTGCTGAATGAGAATTGTTTGAAAAGAAAAGCTGTTAGTGAGGGTTGCGAAGAAGAAGAAAATAAGGATTTGAAGAGTAGAGGATTGTGTTTGGTTCCTGTTTCATGCACAGTGCAAGTTGGAAGTGAAAATGGAGCTGATTATTGGGCTCCTGCATTTGGTGCTGGATTTCAATAG 975 0.4062 MNRSVHLQTSPVQQQMMAGNPNNWWNPPAPDHLQPPSNYFLTPYPSSSSLPLPLPSWHENQQLPDNSWTQLLMSGGVVYEEDKEQVMLTQPALSASSLVDHVKHESSVNNYVYGNEEFHGTTNSTWSQIVSVPSSSSSKSSMLDFSNSARSPSSDPSSDQCNSGAAGGALKKARVQPSTTQSTFKVRKEKLGDRITALHQLVSPFGKTDTASVLLESIGYIRFLHSQIEALSLPYLGNGSPNIIKNQQQQSVQGEKSCFFPEHPGQLLNENCLKRKAVSEGCEEEENKDLKSRGLCLVPVSCTVQVGSENGADYWAPAFGAGFQ 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06323 324 FunFam Transcription factor bHLH123 family 185 250 - -
Vivi5g06323 324 Gene3D - 181 234 IPR036638 GO:0046983
Vivi5g06323 324 MobiDBLite consensus disorder prediction 141 164 - -
Vivi5g06323 324 MobiDBLite consensus disorder prediction 141 181 - -
Vivi5g06323 324 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 175 224 IPR011598 GO:0046983
Vivi5g06323 324 CDD bHLH_AtbHLH_like 183 232 IPR045239 -
Vivi5g06323 324 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 185 235 IPR036638 GO:0046983
Vivi5g06323 324 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 60 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06323 Vivi-Chr5 169677441 169681450 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06323 1 267 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G29100 37.808 1.70e-46 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06323 - - psat:127105731 541.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g06323 5 169677441 169681450 Vivi5g06323 5 169677441 169681450 ECH